2bv2

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{{Seed}}
 
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[[Image:2bv2.png|left|200px]]
 
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==beta gamma crystallin from Ciona Intestinalis==
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The line below this paragraph, containing "STRUCTURE_2bv2", creates the "Structure Box" on the page.
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<StructureSection load='2bv2' size='340' side='right'caption='[[2bv2]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2bv2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ciona_intestinalis Ciona intestinalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BV2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BV2 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_2bv2| PDB=2bv2 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bv2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bv2 OCA], [https://pdbe.org/2bv2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bv2 RCSB], [https://www.ebi.ac.uk/pdbsum/2bv2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bv2 ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/2bv2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bv2 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A refracting lens is a key component of our image-forming camera eye; however, its evolutionary origin is unknown because precursor structures appear absent in nonvertebrates. The vertebrate betagamma-crystallin genes encode abundant structural proteins critical for the function of the lens. We show that the urochordate Ciona intestinalis, which split from the vertebrate lineage before the evolution of the lens, has a single gene coding for a single domain monomeric betagamma-crystallin. The crystal structure of Ciona betagamma-crystallin is very similar to that of a vertebrate betagamma-crystallin domain, except for paired, occupied calcium binding sites. The Ciona betagamma-crystallin is only expressed in the palps and in the otolith, the pigmented sister cell of the light-sensing ocellus. The Ciona betagamma-crystallin promoter region targeted expression to the visual system, including lens, in transgenic Xenopus tadpoles. We conclude that the vertebrate betagamma-crystallins evolved from a single domain protein already expressed in the neuroectoderm of the prevertebrate ancestor. The conservation of the regulatory hierarchy controlling betagamma-crystallin expression between organisms with and without a lens shows that the evolutionary origin of the lens was based on co-option of pre-existing regulatory circuits controlling the expression of a key structural gene in a primitive light-sensing system.
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===BETA GAMMA CRYSTALLIN FROM CIONA INTESTINALIS===
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Urochordate betagamma-crystallin and the evolutionary origin of the vertebrate eye lens.,Shimeld SM, Purkiss AG, Dirks RP, Bateman OA, Slingsby C, Lubsen NH Curr Biol. 2005 Sep 20;15(18):1684-9. PMID:16169492<ref>PMID:16169492</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2bv2" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_16169492}}, adds the Publication Abstract to the page
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*[[Crystallin 3D structures|Crystallin 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 16169492 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_16169492}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2BV2 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Ciona_intestinalis Ciona intestinalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BV2 OCA].
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==Reference==
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<ref group="xtra">PMID:16169492</ref><references group="xtra"/>
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[[Category: Ciona intestinalis]]
[[Category: Ciona intestinalis]]
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[[Category: Bateman, O A.]]
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[[Category: Large Structures]]
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[[Category: Dirks, R P.H.]]
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[[Category: Bateman OA]]
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[[Category: Lubsen, N H.]]
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[[Category: Dirks RPH]]
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[[Category: Purkiss, A G.]]
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[[Category: Lubsen NH]]
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[[Category: Shimeld, S M.]]
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[[Category: Purkiss AG]]
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[[Category: Slingsby, C.]]
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[[Category: Shimeld SM]]
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[[Category: Ascidian]]
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[[Category: Slingsby C]]
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[[Category: Calcium binding]]
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[[Category: Chordate]]
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[[Category: Crystallin]]
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[[Category: Eye lens]]
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[[Category: Spherulin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:26:56 2009''
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Current revision

beta gamma crystallin from Ciona Intestinalis

PDB ID 2bv2

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