This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2pvp
From Proteopedia
(Difference between revisions)
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:2pvp.png|left|200px]] | ||
| - | + | ==Crystal structure of D-Alanine-D-Alanine Ligase from Helicobacter pylori== | |
| - | + | <StructureSection load='2pvp' size='340' side='right'caption='[[2pvp]], [[Resolution|resolution]] 2.40Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2pvp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_SS1 Helicobacter pylori SS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PVP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PVP FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pvp OCA], [https://pdbe.org/2pvp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pvp RCSB], [https://www.ebi.ac.uk/pdbsum/2pvp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pvp ProSAT]</span></td></tr> | |
| - | + | </table> | |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q2N4T5_HELPX Q2N4T5_HELPX] Cell wall formation.[HAMAP-Rule:MF_00047][SAAS:SAAS00232736] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pv/2pvp_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pvp ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | === | + | ==See Also== |
| - | + | *[[D-alanine-D-alanine ligase 3D structures|D-alanine-D-alanine ligase 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Helicobacter pylori SS1]] | |
| - | + | [[Category: Large Structures]] | |
| - | - | + | [[Category: Jiang H]] |
| - | + | [[Category: Shen X]] | |
| - | + | [[Category: Wu D]] | |
| - | + | [[Category: Zhang L]] | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | < | + | |
| - | [[Category: | + | |
| - | [[Category: | + | |
| - | [[Category: Jiang | + | |
| - | [[Category: Shen | + | |
| - | [[Category: Wu | + | |
| - | [[Category: Zhang | + | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of D-Alanine-D-Alanine Ligase from Helicobacter pylori
| |||||||||||

