1yv1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:00, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1yv1.png|left|200px]]
 
-
<!--
+
==Fully reduced state of nigerythrin (all ferrous)==
-
The line below this paragraph, containing "STRUCTURE_1yv1", creates the "Structure Box" on the page.
+
<StructureSection load='1yv1' size='340' side='right'caption='[[1yv1]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1yv1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YV1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YV1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
-
{{STRUCTURE_1yv1| PDB=1yv1 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yv1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yv1 OCA], [https://pdbe.org/1yv1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yv1 RCSB], [https://www.ebi.ac.uk/pdbsum/1yv1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yv1 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Fully reduced state of nigerythrin (all ferrous)===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/NIGY_DESVH NIGY_DESVH] Exhibits NADH peroxidase activity (in vitro).
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15895271}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15895271 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yv/1yv1_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_15895271}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1YV1 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YV1 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yv1 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:15895271</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Desulfovibrio vulgaris]]
+
[[Category: Desulfovibrio vulgaris str. Hildenborough]]
-
[[Category: Iyer, R B.]]
+
[[Category: Large Structures]]
-
[[Category: Kurtz, D M.]]
+
[[Category: Iyer RB]]
-
[[Category: Lanzilotta, W N.]]
+
[[Category: Kurtz DM]]
-
[[Category: Silaghi-Dumitrescu, R.]]
+
[[Category: Lanzilotta WN]]
-
[[Category: Diiron center]]
+
[[Category: Silaghi-Dumitrescu R]]
-
[[Category: Electron transfer]]
+
-
[[Category: Hemerythrin]]
+
-
[[Category: Peroxidase]]
+
-
[[Category: Rubredoxin]]
+
-
[[Category: Rubrerythrin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 06:07:55 2009''
+

Current revision

Fully reduced state of nigerythrin (all ferrous)

PDB ID 1yv1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yv1"
Personal tools