This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1eqr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:06, 7 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1eqr.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF FREE ASPARTYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI==
-
The line below this paragraph, containing "STRUCTURE_1eqr", creates the "Structure Box" on the page.
+
<StructureSection load='1eqr' size='340' side='right'caption='[[1eqr]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1eqr]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EQR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EQR FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_1eqr| PDB=1eqr | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eqr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eqr OCA], [https://pdbe.org/1eqr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eqr RCSB], [https://www.ebi.ac.uk/pdbsum/1eqr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eqr ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SYD_ECOLI SYD_ECOLI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eq/1eqr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eqr ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF FREE ASPARTYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI===
+
==See Also==
-
 
+
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
-
 
+
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_10873442}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 10873442 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10873442}}
+
-
 
+
-
==About this Structure==
+
-
1EQR is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EQR OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:10873442</ref><references group="xtra"/>
+
-
[[Category: Aspartate--tRNA ligase]]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Boeglin, M.]]
+
[[Category: Large Structures]]
-
[[Category: Delarue, M.]]
+
[[Category: Boeglin M]]
-
[[Category: Moras, D.]]
+
[[Category: Delarue M]]
-
[[Category: Rees, B.]]
+
[[Category: Moras D]]
-
[[Category: Webster, G.]]
+
[[Category: Rees B]]
-
[[Category: Anti-parallel beta strand]]
+
[[Category: Webster G]]
-
[[Category: Beta barrel]]
+
-
[[Category: Domain]]
+
-
[[Category: Oligomer binding fold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 06:13:30 2009''
+

Current revision

CRYSTAL STRUCTURE OF FREE ASPARTYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI

PDB ID 1eqr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools