This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2hc9
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2hc9" size="450" color="white" frame="true" align="right" spinBox="true" caption="2hc9, resolution 1.85Å" /> '''Structure of Caenorh...) |
|||
| (19 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2hc9.gif|left|200px]]<br /><applet load="2hc9" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2hc9, resolution 1.85Å" /> | ||
| - | '''Structure of Caenorhabditis elegans leucine aminopeptidase-zinc complex (LAP1)'''<br /> | ||
| - | == | + | ==Structure of Caenorhabditis elegans leucine aminopeptidase-zinc complex (LAP1)== |
| - | + | <StructureSection load='2hc9' size='340' side='right'caption='[[2hc9]], [[Resolution|resolution]] 1.85Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | [[ | + | <table><tr><td colspan='2'>[[2hc9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HC9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HC9 FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85Å</td></tr> |
| - | [[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hc9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hc9 OCA], [https://pdbe.org/2hc9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hc9 RCSB], [https://www.ebi.ac.uk/pdbsum/2hc9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hc9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2hc9 TOPSAN]</span></td></tr> | |
| - | [ | + | </table> |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/AMPL_CAEEL AMPL_CAEEL] Probably acts as a digestive enzyme. | |
| - | [ | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | [ | + | Check<jmol> |
| - | [ | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hc/2hc9_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | [ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | + | </jmolCheckbox> | |
| - | [[ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hc9 ConSurf]. |
| - | + | <div style="clear:both"></div> | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | [ | + | |
| - | [[ | + | |
| - | + | ||
| - | + | ||
| - | + | ==See Also== | |
| + | *[[Aminopeptidase 3D structures|Aminopeptidase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Caenorhabditis elegans]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Almo SC]] | ||
| + | [[Category: Burley SK]] | ||
| + | [[Category: Milstein S]] | ||
| + | [[Category: Patskovsky Y]] | ||
| + | [[Category: Ramagopal U]] | ||
| + | [[Category: Vidal M]] | ||
| + | [[Category: Wengerter BC]] | ||
| + | [[Category: Zhan C]] | ||
Current revision
Structure of Caenorhabditis elegans leucine aminopeptidase-zinc complex (LAP1)
| |||||||||||
