1bd4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:35, 7 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1bd4.png|left|200px]]
 
-
<!--
+
==UPRT-URACIL COMPLEX==
-
The line below this paragraph, containing "STRUCTURE_1bd4", creates the "Structure Box" on the page.
+
<StructureSection load='1bd4' size='340' side='right'caption='[[1bd4]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1bd4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Toxoplasma_gondii Toxoplasma gondii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BD4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BD4 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=URA:URACIL'>URA</scene></td></tr>
-
{{STRUCTURE_1bd4| PDB=1bd4 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bd4 OCA], [https://pdbe.org/1bd4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bd4 RCSB], [https://www.ebi.ac.uk/pdbsum/1bd4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bd4 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/UPP_TOXGO UPP_TOXGO] Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate.<ref>PMID:9247925</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/1bd4_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bd4 ConSurf].
 +
<div style="clear:both"></div>
-
===UPRT-URACIL COMPLEX===
+
==See Also==
-
 
+
*[[Phosphoribosyltransferase 3D structures|Phosphoribosyltransferase 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_9628859}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 9628859 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Large Structures]]
-
{{ABSTRACT_PUBMED_9628859}}
+
-
 
+
-
==About this Structure==
+
-
1BD4 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Toxoplasma_gondii Toxoplasma gondii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BD4 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:9628859</ref><references group="xtra"/>
+
[[Category: Toxoplasma gondii]]
[[Category: Toxoplasma gondii]]
-
[[Category: Uracil phosphoribosyltransferase]]
+
[[Category: Brennan RG]]
-
[[Category: Brennan, R G.]]
+
[[Category: Carter D]]
-
[[Category: Carter, D.]]
+
[[Category: Roos D]]
-
[[Category: Roos, D.]]
+
[[Category: Schumacher MA]]
-
[[Category: Schumacher, M A.]]
+
[[Category: Scott D]]
-
[[Category: Scott, D.]]
+
[[Category: Ullman B]]
-
[[Category: Ullman, B.]]
+
-
[[Category: Complex]]
+
-
[[Category: Glycosyltransferase]]
+
-
[[Category: Transferase]]
+
-
[[Category: Uprt]]
+
-
[[Category: Uracil]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 08:08:47 2009''
+

Current revision

UPRT-URACIL COMPLEX

PDB ID 1bd4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1bd4"
Personal tools