2hqt

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(New page: 200px<br /><applet load="2hqt" size="450" color="white" frame="true" align="right" spinBox="true" caption="2hqt, resolution 1.90&Aring;" /> '''Crystal structures o...)
Current revision (09:34, 14 February 2024) (edit) (undo)
 
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[[Image:2hqt.jpg|left|200px]]<br /><applet load="2hqt" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2hqt, resolution 1.90&Aring;" />
 
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'''Crystal structures of the interacting domains from yeast glutamyl-tRNA synthetase and tRNA aminoacylation and nuclear export cofactor Arc1p reveal a novel function for an old fold'''<br />
 
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==Overview==
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==Crystal structures of the interacting domains from yeast glutamyl-tRNA synthetase and tRNA aminoacylation and nuclear export cofactor Arc1p reveal a novel function for an old fold==
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Eukaryotic aminoacyl-tRNA synthetases (aaRS) frequently contain additional, appended domains that are absent from their prokaryotic counterparts which, mediate complex formation between eukaryotic aaRS and cofactors of, aminoacylation and translation. However, the structural basis of such, interactions has remained elusive. The heteromerization domain of yeast, glutamyl-tRNA synthetase (GluRS) has been cloned, expressed, purified and, crystallized in space group C222(1), with unit-cell parameters a = 52, b =, 107, c = 168 A. Phase information was obtained from multiple-wavelength, anomalous dispersion with selenomethionine to 2.5 A resolution and the, structure, comprising two monomers per asymmetric unit, was determined and, refined to 1.9 A resolution. The structure of the interacting domain of, its accessory protein Arc1p was determined and refined to 1.9 A resolution, in a crystal form containing 20 monomers organized in five tetramers per, asymmetric unit (space group C2, unit-cell parameters a = 222, b = 89, c =, 127 A, beta = 99.4 degrees ). Both domains adopt a GST-like fold, demonstrating a novel role for this fold as a protein-protein interaction, module.
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<StructureSection load='2hqt' size='340' side='right'caption='[[2hqt]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[2hqt]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HQT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HQT FirstGlance]. <br>
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2HQT is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with SO4 as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2HQT OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hqt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hqt OCA], [https://pdbe.org/2hqt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hqt RCSB], [https://www.ebi.ac.uk/pdbsum/2hqt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hqt ProSAT]</span></td></tr>
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Structures of the interacting domains from yeast glutamyl-tRNA synthetase and tRNA-aminoacylation and nuclear-export cofactor Arc1p reveal a novel function for an old fold., Simader H, Hothorn M, Suck D, Acta Crystallogr D Biol Crystallogr. 2006 Dec;62(Pt 12):1510-9. Epub 2006, Nov 23. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17139087 17139087]
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ARC1_YEAST ARC1_YEAST] Binds to tRNA and functions as a cofactor for the methionyl-tRNA synthetase (MetRS) and glutamyl-tRNA synthetase (GluRS). Forms a complex with MetRS and GluRS and increases their affinity for cognate tRNAs due to the presence of a tRNA binding domain in its middle and C-terminal part. Binds specifically G4 quadruplex nucleic acid structures (these are four-stranded right-handed helices, stabilized by guanine base quartets). Also required for cytoplasmic confinement of the synthetases and tRNA.<ref>PMID:11069915</ref> <ref>PMID:17131041</ref> <ref>PMID:8895587</ref> <ref>PMID:9659920</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hq/2hqt_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hqt ConSurf].
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<div style="clear:both"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
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[[Category: Single protein]]
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[[Category: Hothorn M]]
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[[Category: Hothorn, M.]]
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[[Category: Simader H]]
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[[Category: Simader, H.]]
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[[Category: Suck D]]
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[[Category: Suck, D.]]
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[[Category: SO4]]
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[[Category: gst-fold]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 11:55:19 2007''
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Current revision

Crystal structures of the interacting domains from yeast glutamyl-tRNA synthetase and tRNA aminoacylation and nuclear export cofactor Arc1p reveal a novel function for an old fold

PDB ID 2hqt

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