2vrn

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{{Seed}}
 
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[[Image:2vrn.png|left|200px]]
 
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==The structure of the stress response protein DR1199 from Deinococcus radiodurans: a member of the DJ-1 superfamily==
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The line below this paragraph, containing "STRUCTURE_2vrn", creates the "Structure Box" on the page.
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<StructureSection load='2vrn' size='340' side='right'caption='[[2vrn]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2vrn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VRN FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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{{STRUCTURE_2vrn| PDB=2vrn | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vrn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vrn OCA], [https://pdbe.org/2vrn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vrn RCSB], [https://www.ebi.ac.uk/pdbsum/2vrn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vrn ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9RV31_DEIRA Q9RV31_DEIRA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/2vrn_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vrn ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The expression level of protein DR1199 is observed to increase considerably in the radio-resistant bacterium Deinococcus radiodurans following irradiation. This protein belongs to the DJ-1 superfamily, which includes proteins with diverse functions, such as the archaeal proteases PhpI and PfpI, the bacterial chaperone Hsp31 and hyperosmotic stress protein YhbO, and the human Parkinson's disease-related protein DJ-1. All members of the superfamily are oligomeric, and the oligomerization interface varies from protein to protein. Although for many of these proteins, their function remains obscure, most of them are involved in cellular protection against environmental stresses. We have determined the structure of DR1199 to a resolution of 2.15 A, and we have tested its function and studied its role in the response to irradiation and more generally to oxidative stress in D. radiodurans. The protein is a dimer displaying an oligomerization interface similar to that observed for the YhbO and PhpI proteins. The cysteine in the catalytic triad (Cys 115) is oxidized in our structure, similar to modifications seen in the corresponding cysteine of the DJ-1 protein. The oxidation occurs spontaneously in DR1199 crystals. In solution, no proteolytic or chaperone activity was detected. On the basis of our results, we suggest that DR1199 might work as a general stress protein involved in the detoxification of the cell from oxygen reactive species, rather than as a peptidase in D. radiodurans.
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===THE STRUCTURE OF THE STRESS RESPONSE PROTEIN DR1199 FROM DEINOCOCCUS RADIODURANS: A MEMBER OF THE DJ-1 SUPERFAMILY===
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Structure of the Stress Response Protein DR1199 from Deinococcus radiodurans: A Member of the DJ-1 Superfamily.,Fioravanti E, Dura MA, Lascoux D, Micossi E, Franzetti B, McSweeney S Biochemistry. 2008 Oct 14. PMID:18850720<ref>PMID:18850720</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18850720}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2vrn" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18850720 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18850720}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Deinococcus radiodurans R1]]
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2VRN is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRN OCA].
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[[Category: Large Structures]]
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[[Category: Dura MA]]
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==Reference==
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[[Category: Fioravanti E]]
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<ref group="xtra">PMID:18850720</ref><references group="xtra"/>
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[[Category: Lascoux D]]
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[[Category: Deinococcus radiodurans]]
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[[Category: McSweeney S]]
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[[Category: Dura, M A.]]
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[[Category: Micossi E]]
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[[Category: Fioravanti, E.]]
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[[Category: Lascoux, D.]]
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[[Category: Mcsweeney, S.]]
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[[Category: Micossi, E.]]
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[[Category: Cysteine sulfenic acid]]
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[[Category: Dj-1/thij/pfpi superfamily]]
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[[Category: Hydrolase]]
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[[Category: Protease]]
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[[Category: Stress response]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 09:07:04 2009''
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Current revision

The structure of the stress response protein DR1199 from Deinococcus radiodurans: a member of the DJ-1 superfamily

PDB ID 2vrn

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