2iba

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(New page: 200px<br /><applet load="2iba" size="450" color="white" frame="true" align="right" spinBox="true" caption="2iba, resolution 1.500&Aring;" /> '''Urate oxidase from ...)
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[[Image:2iba.jpg|left|200px]]<br /><applet load="2iba" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2iba, resolution 1.500&Aring;" />
 
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'''Urate oxidase from Aspergillus flavus complexed with its inhibitor 8-azaxanthine'''<br />
 
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==Overview==
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==Urate oxidase from Aspergillus flavus complexed with its inhibitor 8-azaxanthine==
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In contrast with most inhalational anesthetics, the anesthetic gases xenon, (Xe) and nitrous oxide (N(2)O) act by blocking the N-methyl-d-aspartate, (NMDA) receptor. Using x-ray crystallography, we examined the binding, characteristics of these two gases on two soluble proteins as structural, models: urate oxidase, which is a prototype of a variety of intracellular, globular proteins, and annexin V, which has structural and functional, characteristics that allow it to be considered as a prototype for the NMDA, receptor. The structure of these proteins complexed with Xe and N(2)O were, determined. One N(2)O molecule or one Xe atom binds to the same main site, in both proteins. A second subsite is observed for N(2)O in each case. The, gas-binding sites are always hydrophobic flexible cavities buried within, the monomer. Comparison of the effects of Xe and N(2)O on urate oxidase, and annexin V reveals an interesting relationship with the in vivo, pharmacological effects of these gases, the ratio of the gas-binding, sites' volume expansion and the ratio of the narcotic potency being, similar. Given these data, we propose that alterations of cytosolic, globular protein functions by general anesthetics would be responsible for, the early stages of anesthesia such as amnesia and hypnosis and that, additional alterations of ion-channel membrane receptor functions are, required for deeper effects that progress to "surgical" anesthesia.
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<StructureSection load='2iba' size='340' side='right'caption='[[2iba]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2iba]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_flavus Aspergillus flavus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IBA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IBA FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=AZA:8-AZAXANTHINE'>AZA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2iba FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iba OCA], [https://pdbe.org/2iba PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2iba RCSB], [https://www.ebi.ac.uk/pdbsum/2iba PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2iba ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/URIC_ASPFL URIC_ASPFL] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ib/2iba_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2iba ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In contrast with most inhalational anesthetics, the anesthetic gases xenon (Xe) and nitrous oxide (N(2)O) act by blocking the N-methyl-d-aspartate (NMDA) receptor. Using x-ray crystallography, we examined the binding characteristics of these two gases on two soluble proteins as structural models: urate oxidase, which is a prototype of a variety of intracellular globular proteins, and annexin V, which has structural and functional characteristics that allow it to be considered as a prototype for the NMDA receptor. The structure of these proteins complexed with Xe and N(2)O were determined. One N(2)O molecule or one Xe atom binds to the same main site in both proteins. A second subsite is observed for N(2)O in each case. The gas-binding sites are always hydrophobic flexible cavities buried within the monomer. Comparison of the effects of Xe and N(2)O on urate oxidase and annexin V reveals an interesting relationship with the in vivo pharmacological effects of these gases, the ratio of the gas-binding sites' volume expansion and the ratio of the narcotic potency being similar. Given these data, we propose that alterations of cytosolic globular protein functions by general anesthetics would be responsible for the early stages of anesthesia such as amnesia and hypnosis and that additional alterations of ion-channel membrane receptor functions are required for deeper effects that progress to "surgical" anesthesia.
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==About this Structure==
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Protein crystallography under xenon and nitrous oxide pressure: comparison with in vivo pharmacology studies and implications for the mechanism of inhaled anesthetic action.,Colloc'h N, Sopkova-de Oliveira Santos J, Retailleau P, Vivares D, Bonnete F, Langlois d'Estainto B, Gallois B, Brisson A, Risso JJ, Lemaire M, Prange T, Abraini JH Biophys J. 2007 Jan 1;92(1):217-24. Epub 2006 Oct 6. PMID:17028130<ref>PMID:17028130</ref>
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2IBA is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aspergillus_flavus Aspergillus flavus] with NA, ACE and AZA as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Urate_oxidase Urate oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.3.3 1.7.3.3] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2IBA OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Protein crystallography under xenon and nitrous oxide pressure: comparison with in vivo pharmacology studies and implications for the mechanism of inhaled anesthetic action., Colloc'h N, Sopkova-de Oliveira Santos J, Retailleau P, Vivares D, Bonnete F, Langlois d'Estainto B, Gallois B, Brisson A, Risso JJ, Lemaire M, Prange T, Abraini JH, Biophys J. 2007 Jan 1;92(1):217-24. Epub 2006 Oct 6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17028130 17028130]
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</div>
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[[Category: Aspergillus flavus]]
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<div class="pdbe-citations 2iba" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Urate oxidase]]
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[[Category: Prange, T.]]
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[[Category: Retailleau, P.]]
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[[Category: Santos, J.Sopkova-de.Oliveira.]]
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[[Category: h, N.Colloc.]]
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[[Category: ACE]]
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[[Category: AZA]]
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[[Category: NA]]
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[[Category: t-fold domain]]
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[[Category: tetrameric enzyme]]
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[[Category: uric acid degradation]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 12:13:49 2007''
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==See Also==
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*[[Urate oxidase 3D structures|Urate oxidase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Aspergillus flavus]]
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[[Category: Large Structures]]
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[[Category: Colloc'h N]]
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[[Category: Prange T]]
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[[Category: Retailleau P]]
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[[Category: Sopkova-de Oliveira Santos J]]

Current revision

Urate oxidase from Aspergillus flavus complexed with its inhibitor 8-azaxanthine

PDB ID 2iba

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