2idb

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(New page: 200px<br /><applet load="2idb" size="450" color="white" frame="true" align="right" spinBox="true" caption="2idb, resolution 2.90&Aring;" /> '''Crystal Structure of...)
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[[Image:2idb.jpg|left|200px]]<br /><applet load="2idb" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2idb, resolution 2.90&Aring;" />
 
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'''Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.'''<br />
 
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==About this Structure==
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==Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.==
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2IDB is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12] with 1PE and EDO as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2IDB OCA].
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<StructureSection load='2idb' size='340' side='right'caption='[[2idb]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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[[Category: Escherichia coli k12]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[2idb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IDB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IDB FirstGlance]. <br>
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[[Category: Acton, T.B.]]
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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[[Category: Chen, C.X.]]
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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[[Category: Cunningham, K.]]
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ubiD, b3843 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
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[[Category: Fang, Y.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2idb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2idb OCA], [https://pdbe.org/2idb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2idb RCSB], [https://www.ebi.ac.uk/pdbsum/2idb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2idb ProSAT], [https://www.topsan.org/Proteins/NESGC/2idb TOPSAN]</span></td></tr>
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[[Category: Forouhar, F.]]
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</table>
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[[Category: Hunt, J.F.]]
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== Function ==
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[[Category: Ma, L.C.]]
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[[https://www.uniprot.org/uniprot/UBID_ECOLI UBID_ECOLI]] Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol.[HAMAP-Rule:MF_01636]
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[[Category: Montelione, G.T.]]
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== Evolutionary Conservation ==
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[[Category: NESG, Northeast.Structural.Genomics.Consortium.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/2idb_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2idb ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
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[[Category: Ecoli]]
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[[Category: Large Structures]]
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[[Category: Acton, T B]]
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[[Category: Chen, C X]]
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[[Category: Cunningham, K]]
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[[Category: Fang, Y]]
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[[Category: Forouhar, F]]
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[[Category: Hunt, J F]]
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[[Category: Ma, L C]]
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[[Category: Montelione, G T]]
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[[Category: Structural genomic]]
[[Category: Seetharaman, J]]
[[Category: Seetharaman, J]]
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[[Category: Tong, L.]]
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[[Category: Tong, L]]
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[[Category: Xiao, R.]]
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[[Category: Xiao, R]]
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[[Category: Zhou, W.]]
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[[Category: Zhou, W]]
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[[Category: 1PE]]
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[[Category: Alpha-beta protein]]
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[[Category: EDO]]
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[[Category: Lyase]]
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[[Category: alpha-beta protein]]
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[[Category: Nesg]]
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[[Category: nesg]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: northeast structural genomics consortium]]
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[[Category: protein structure initiative]]
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[[Category: psi-2]]
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[[Category: structural genomics]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 12:15:28 2007''
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Current revision

Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.

PDB ID 2idb

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