2qyg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:42, 30 August 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2qyg.png|left|200px]]
 
-
<!--
+
==Crystal Structure of a RuBisCO-like Protein rlp2 from Rhodopseudomonas palustris==
-
The line below this paragraph, containing "STRUCTURE_2qyg", creates the "Structure Box" on the page.
+
<StructureSection load='2qyg' size='340' side='right'caption='[[2qyg]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2qyg]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_CGA009 Rhodopseudomonas palustris CGA009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QYG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QYG FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qyg OCA], [https://pdbe.org/2qyg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qyg RCSB], [https://www.ebi.ac.uk/pdbsum/2qyg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qyg ProSAT]</span></td></tr>
-
{{STRUCTURE_2qyg| PDB=2qyg | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RBLL2_RHOPA RBLL2_RHOPA] May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/2qyg_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qyg ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
About 30 years have now passed since it was discovered that microbes synthesize RubisCO molecules that differ from the typical plant paradigm. RubisCOs of forms I, II, and III catalyze CO(2) fixation reactions, albeit for potentially different physiological purposes, while the RubisCO-like protein (RLP) (form IV RubisCO) has evolved, thus far at least, to catalyze reactions that are important for sulfur metabolism. RubisCO is the major global CO(2) fixation catalyst, and RLP is a somewhat related protein, exemplified by the fact that some of the latter proteins, along with RubisCO, catalyze similar enolization reactions as a part of their respective catalytic mechanisms. RLP in some organisms catalyzes a key reaction of a methionine salvage pathway, while in green sulfur bacteria, RLP plays a role in oxidative thiosulfate metabolism. In many organisms, the function of RLP is unknown. Indeed, there now appear to be at least six different clades of RLP molecules found in nature. Consideration of the many RubisCO (forms I, II, and III) and RLP (form IV) sequences in the database has subsequently led to a coherent picture of how these proteins may have evolved, with a form III RubisCO arising from the Methanomicrobia as the most likely ultimate source of all RubisCO and RLP lineages. In addition, structure-function analyses of RLP and RubisCO have provided information as to how the active sites of these proteins have evolved for their specific functions.
-
===Crystal Structure of a RuBisCO-like Protein rlp2 from Rhodopseudomonas palustris===
+
Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs.,Tabita FR, Hanson TE, Li H, Satagopan S, Singh J, Chan S Microbiol Mol Biol Rev. 2007 Dec;71(4):576-99. PMID:18063718<ref>PMID:18063718</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18063718}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2qyg" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18063718 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_18063718}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
2QYG is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_cga009 Rhodopseudomonas palustris cga009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QYG OCA].
+
[[Category: Rhodopseudomonas palustris CGA009]]
-
 
+
[[Category: Chan S]]
-
==Reference==
+
[[Category: Eisenberg D]]
-
<ref group="xtra">PMID:18063718</ref><references group="xtra"/>
+
[[Category: Li H]]
-
[[Category: Rhodopseudomonas palustris cga009]]
+
[[Category: Tabita FR]]
-
[[Category: Chan, S.]]
+
-
[[Category: Eisenberg, D.]]
+
-
[[Category: Li, H.]]
+
-
[[Category: Tabita, F R.]]
+
-
[[Category: Beta-alpha-barrel]]
+
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 10:08:59 2009''
+

Current revision

Crystal Structure of a RuBisCO-like Protein rlp2 from Rhodopseudomonas palustris

PDB ID 2qyg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools