2oaw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:34, 30 August 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2oaw.png|left|200px]]
 
-
<!--
+
==Structure of SHH variant of "Bergerac" chimera of spectrin SH3==
-
The line below this paragraph, containing "STRUCTURE_2oaw", creates the "Structure Box" on the page.
+
<StructureSection load='2oaw' size='340' side='right'caption='[[2oaw]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2oaw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OAW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OAW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
{{STRUCTURE_2oaw| PDB=2oaw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oaw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oaw OCA], [https://pdbe.org/2oaw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oaw RCSB], [https://www.ebi.ac.uk/pdbsum/2oaw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oaw ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SPTN1_CHICK SPTN1_CHICK] Morphologically, spectrin-like proteins appear to be related to spectrin, showing a flexible rod-like structure. They can bind actin but seem to differ in their calmodulin-binding activity. In nonerythroid tissues, spectrins, in association with some other proteins, may play an important role in membrane organization.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oa/2oaw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oaw ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Bergerac-type chimeras of spectrin SH3 were designed by extending a beta-hairpin by eight amino acids so that the extension protruded from the domain body like a "nose" being exposed to the solvent. A calorimetric study of several Bergerac-SH3 variants was carried out over a wide range of pH values and protein concentrations and the three-dimensional structure of one of them, SHH, was determined. X-ray studies confirmed that the nose had a well defined beta-structure whilst the chimera formed a stable tetramer within the crystal unit because of four tightly packed noses. In the pH range of 4-7 the heat-induced unfolding of some chimeras was complex and concentration dependent, whilst at pH values below 3.5, low protein concentrations of all the chimeras studied, including SHH, seemed to obey a monomolecular two-state unfolding model. The best set of data was obtained for the SHA variant, the unfolding heat effects of which were systematically higher than those of the WT protein (about 16.4 kJ/mol at 323 K), which may be close to the upper limit of the enthalpy gain due to 10 residue beta-hairpin folding. At the same time, the chimeras with high nose stability, which, like SHH, have a hydrophobic (IVY) cluster on their surface, showed a lower apparent unfolding heat effect, much closer to that of the WT protein. The possible reasons for this difference are discussed.
-
===Structure of SHH variant of "Bergerac" chimera of spectrin SH3===
+
Structural and thermodynamic studies of Bergerac-SH3 chimeras.,Gushchina LV, Gabdulkhakov AG, Nikonov SV, Mateo PL, Filimonov VV Biophys Chem. 2009 Feb;139(2-3):106-15. Epub 2008 Nov 9. PMID:19042078<ref>PMID:19042078</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2oaw" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_19042078}}, adds the Publication Abstract to the page
+
*[[Spectrin 3D structures|Spectrin 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 19042078 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_19042078}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
2OAW is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OAW OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:19042078</ref><references group="xtra"/>
+
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
-
[[Category: Filimonov, V V.]]
+
[[Category: Large Structures]]
-
[[Category: Gabdoulkhakov, A G.]]
+
[[Category: Filimonov VV]]
-
[[Category: Gushchina, L V.]]
+
[[Category: Gabdoulkhakov AG]]
-
[[Category: Nikonov, S V.]]
+
[[Category: Gushchina LV]]
-
[[Category: Nikulin, A D.]]
+
[[Category: Nikonov SV]]
-
[[Category: Serrano, L.]]
+
[[Category: Nikulin AD]]
-
[[Category: Viguera, A R.]]
+
[[Category: Serrano L]]
-
[[Category: Chimera]]
+
[[Category: Viguera AR]]
-
[[Category: Sh3 domain]]
+
-
[[Category: Structural protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 25 08:13:49 2009''
+

Current revision

Structure of SHH variant of "Bergerac" chimera of spectrin SH3

PDB ID 2oaw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2oaw"
Personal tools