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2im8
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2im8" size="450" color="white" frame="true" align="right" spinBox="true" caption="2im8, resolution 2.00Å" /> '''X-Ray Crystal Struct...) |
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| - | [[Image:2im8.gif|left|200px]]<br /><applet load="2im8" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2im8, resolution 2.00Å" /> | ||
| - | '''X-Ray Crystal Structure of Protein yppE from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR213.'''<br /> | ||
| - | == | + | ==X-Ray Crystal Structure of Protein yppE from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR213.== |
| - | + | <StructureSection load='2im8' size='340' side='right'caption='[[2im8]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | [[Category: | + | == Structural highlights == |
| - | [[Category: | + | <table><tr><td colspan='2'>[[2im8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IM8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IM8 FirstGlance]. <br> |
| - | [[Category: Acton, T | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | [[Category: Baran, M | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Cunningham, K | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2hfi|2hfi]]</div></td></tr> |
| - | [[Category: Hang, D | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yppE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr> |
| - | [[Category: Hunt, J | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2im8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2im8 OCA], [https://pdbe.org/2im8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2im8 RCSB], [https://www.ebi.ac.uk/pdbsum/2im8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2im8 ProSAT], [https://www.topsan.org/Proteins/NESGC/2im8 TOPSAN]</span></td></tr> |
| - | [[Category: Janjua, H | + | </table> |
| - | [[Category: Kuzin, A | + | == Evolutionary Conservation == |
| - | [[Category: Liu, J | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Ma, L | + | Check<jmol> |
| - | [[Category: Montelione, G | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/im/2im8_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Rost, B | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Shastry, R | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Tong, L | + | </jmolCheckbox> |
| - | [[Category: Xiao, R | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2im8 ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | [[Category: | + | __TOC__ |
| - | + | </StructureSection> | |
| - | + | [[Category: Vibrio subtilis ehrenberg 1835]] | |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Acton, T B]] |
| - | [[Category: | + | [[Category: Baran, M C]] |
| - | + | [[Category: Cunningham, K]] | |
| - | + | [[Category: Hang, D]] | |
| - | + | [[Category: Hunt, J F]] | |
| - | + | [[Category: Janjua, H]] | |
| + | [[Category: Kuzin, A P]] | ||
| + | [[Category: Liu, J]] | ||
| + | [[Category: Ma, L C]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Rost, B]] | ||
| + | [[Category: Shastry, R]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: Nesg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Sr213]] | ||
| + | [[Category: Unknown function]] | ||
| + | [[Category: Yppe]] | ||
Current revision
X-Ray Crystal Structure of Protein yppE from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR213.
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Categories: Vibrio subtilis ehrenberg 1835 | Large Structures | Acton, T B | Baran, M C | Cunningham, K | Hang, D | Hunt, J F | Janjua, H | Kuzin, A P | Liu, J | Ma, L C | Montelione, G T | Structural genomic | Rost, B | Shastry, R | Tong, L | Xiao, R | Nesg | PSI, Protein structure initiative | Sr213 | Unknown function | Yppe
