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3ga2

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(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3ga2", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
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[[Image:3ga2.jpg|left|200px]]
 
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==Crystal structure of the Endonuclease_V (BSU36170) from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR624==
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The line below this paragraph, containing "STRUCTURE_3ga2", creates the "Structure Box" on the page.
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<StructureSection load='3ga2' size='340' side='right'caption='[[3ga2]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3ga2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GA2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GA2 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nfi, ywqL ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
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{{STRUCTURE_3ga2| PDB=3ga2 | SCENE= }}
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Deoxyribonuclease_V Deoxyribonuclease V], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.7 3.1.21.7] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ga2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ga2 OCA], [https://pdbe.org/3ga2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ga2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ga2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ga2 ProSAT], [https://www.topsan.org/Proteins/NESGC/3ga2 TOPSAN]</span></td></tr>
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/NFI_BACSU NFI_BACSU]] Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. Acts in DNA repair (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ga/3ga2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ga2 ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of the Endonuclease_V (BSU36170) from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR624===
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==See Also==
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*[[Endonuclease 3D structures|Endonuclease 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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3GA2 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GA2 OCA].
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[[Category: Vibrio subtilis ehrenberg 1835]]
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[[Category: Bacillus subtilis]]
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[[Category: Deoxyribonuclease V]]
[[Category: Deoxyribonuclease V]]
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[[Category: Abashidze, M.]]
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[[Category: Large Structures]]
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[[Category: Acton, T B.]]
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[[Category: Abashidze, M]]
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[[Category: Cunningham, K.]]
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[[Category: Acton, T B]]
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[[Category: Everett, J K.]]
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[[Category: Cunningham, K]]
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[[Category: Fang, Y.]]
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[[Category: Everett, J K]]
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[[Category: Forouhar, F.]]
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[[Category: Fang, Y]]
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[[Category: Hunt, J F.]]
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[[Category: Forouhar, F]]
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[[Category: Hussain, M.]]
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[[Category: Hunt, J F]]
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[[Category: Janjua, H.]]
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[[Category: Hussain, M]]
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[[Category: Ma, L-.C.]]
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[[Category: Janjua, H]]
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[[Category: Montelione, G T.]]
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[[Category: Ma, L C]]
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[[Category: NESG, Northeast Structural Genomics Consortium.]]
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[[Category: Montelione, G T]]
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[[Category: Nair, R.]]
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[[Category: Structural genomic]]
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[[Category: Owens, L.]]
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[[Category: Nair, R]]
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[[Category: Rost, B.]]
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[[Category: Owens, L]]
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[[Category: Seetharaman, J.]]
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[[Category: Rost, B]]
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[[Category: Tong, L.]]
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[[Category: Seetharaman, J]]
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[[Category: Wang, D.]]
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[[Category: Tong, L]]
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[[Category: Xiao, R.]]
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[[Category: Wang, D]]
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[[Category: Xiao, R]]
[[Category: Alpha-beta protein]]
[[Category: Alpha-beta protein]]
[[Category: Cytoplasm]]
[[Category: Cytoplasm]]
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[[Category: Magnesium]]
[[Category: Magnesium]]
[[Category: Nesg]]
[[Category: Nesg]]
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[[Category: Northeast structural genomics consortium]]
 
[[Category: Nuclease]]
[[Category: Nuclease]]
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[[Category: Protein structure initiative]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Psi-2]]
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[[Category: Structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 25 09:38:54 2009''
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Current revision

Crystal structure of the Endonuclease_V (BSU36170) from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR624

PDB ID 3ga2

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