2zw0

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{{Seed}}
 
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[[Image:2zw0.jpg|left|200px]]
 
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==Crystal structure of a Streptococcal protein G B1 mutant==
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The line below this paragraph, containing "STRUCTURE_2zw0", creates the "Structure Box" on the page.
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<StructureSection load='2zw0' size='340' side='right'caption='[[2zw0]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2zw0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Finegoldia_magna Finegoldia magna]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZW0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZW0 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_2zw0| PDB=2zw0 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zw0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zw0 OCA], [https://pdbe.org/2zw0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zw0 RCSB], [https://www.ebi.ac.uk/pdbsum/2zw0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zw0 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q53291_FINMA Q53291_FINMA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zw/2zw0_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zw0 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Protein-protein interaction in response to environmental conditions enables sophisticated biological and biotechnological processes. Aiming toward the rational design of a pH-sensitive protein-protein interaction, we engineered pH-sensitive mutants of streptococcal protein G B1, a binder to the IgG constant region. We systematically introduced histidine residues into the binding interface to cause electrostatic repulsion on the basis of a rigid body model. Exquisite pH sensitivity of this interaction was confirmed by surface plasmon resonance and affinity chromatography employing a clinically used human IgG. The pH-sensitive mechanism of the interaction was analyzed and evaluated from kinetic, thermodynamic, and structural viewpoints. Histidine-mediated electrostatic repulsion resulted in significant loss of exothermic heat of the binding that decreased the affinity only at acidic conditions, thereby improving the pH sensitivity. The reduced binding energy was partly recovered by "enthalpy-entropy compensation." Crystal structures of the designed mutants confirmed the validity of the rigid body model on which the effective electrostatic repulsion was based. Moreover, our data suggested that the entropy gain involved exclusion of water molecules solvated in a space formed by the introduced histidine and adjacent tryptophan residue. Our findings concerning the mechanism of histidine-introduced interactions will provide a guideline for the rational design of pH-sensitive protein-protein recognition.
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===Crystal structure of a Streptococcal protein G B1 mutant===
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Optimizing pH response of affinity between protein G and IgG Fc: how electrostatic modulations affect protein-protein interactions.,Watanabe H, Matsumaru H, Ooishi A, Feng Y, Odahara T, Suto K, Honda S J Biol Chem. 2009 May 1;284(18):12373-83. Epub 2009 Mar 6. PMID:19269963<ref>PMID:19269963</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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2ZW0 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Finegoldia_magna Finegoldia magna]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZW0 OCA].
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<div class="pdbe-citations 2zw0" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Finegoldia magna]]
[[Category: Finegoldia magna]]
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[[Category: Honda, S.]]
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[[Category: Large Structures]]
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[[Category: Matsumaru, H.]]
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[[Category: Honda S]]
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[[Category: Odahara, T.]]
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[[Category: Matsumaru H]]
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[[Category: Suto, K.]]
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[[Category: Odahara T]]
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[[Category: Watanabe, H.]]
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[[Category: Suto K]]
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[[Category: Immune system]]
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[[Category: Watanabe H]]
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[[Category: Immunoglobulin binding domain]]
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[[Category: Ph-dependent ligand binding]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 4 14:39:23 2009''
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Current revision

Crystal structure of a Streptococcal protein G B1 mutant

PDB ID 2zw0

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