We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

3fzv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:58, 9 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3fzv.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa==
-
The line below this paragraph, containing "STRUCTURE_3fzv", creates the "Structure Box" on the page.
+
<StructureSection load='3fzv' size='340' side='right'caption='[[3fzv]], [[Resolution|resolution]] 2.71&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3fzv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FZV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FZV FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.71&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3fzv| PDB=3fzv | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fzv OCA], [https://pdbe.org/3fzv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fzv RCSB], [https://www.ebi.ac.uk/pdbsum/3fzv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fzv ProSAT], [https://www.topsan.org/Proteins/MCSG/3fzv TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9I6S0_PSEAE Q9I6S0_PSEAE]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3FZV is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_pao1 Pseudomonas aeruginosa pao1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FZV OCA].
+
Check<jmol>
-
[[Category: Pseudomonas aeruginosa pao1]]
+
<jmolCheckbox>
-
[[Category: Bujnicki, J M.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fz/3fzv_consurf.spt"</scriptWhenChecked>
-
[[Category: Chruszcz, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Cymborowski, M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Edwards, A M.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fzv ConSurf].
-
[[Category: Kagan, O.]]
+
<div style="clear:both"></div>
-
[[Category: Knapik, A A.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Minor, W.]]
+
[[Category: Large Structures]]
-
[[Category: Savchenko, A.]]
+
[[Category: Pseudomonas aeruginosa PAO1]]
-
[[Category: Skarina, T.]]
+
[[Category: Bujnicki JM]]
-
[[Category: Tkaczuk, K L.]]
+
[[Category: Chruszcz M]]
-
[[Category: Wang, S.]]
+
[[Category: Cymborowski M]]
-
[[Category: Zimmerman, M D.]]
+
[[Category: Edwards AM]]
-
[[Category: Dna-binding]]
+
[[Category: Joachimiak A]]
-
[[Category: Lysr]]
+
[[Category: Kagan O]]
-
[[Category: Mcsg]]
+
[[Category: Knapik AA]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Minor W]]
-
[[Category: Protein structure initiative]]
+
[[Category: Savchenko A]]
-
[[Category: Psi-2]]
+
[[Category: Skarina T]]
-
[[Category: Structural genomic]]
+
[[Category: Tkaczuk KL]]
-
[[Category: Transcription]]
+
[[Category: Wang S]]
-
[[Category: Transcription regulation]]
+
[[Category: Zimmerman MD]]
-
[[Category: Transcription regulator]]
+
-
[[Category: Transcriptional regulator]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 11 11:27:47 2009''
+

Current revision

Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa

PDB ID 3fzv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools