3fiu

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{{Seed}}
 
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[[Image:3fiu.png|left|200px]]
 
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==Structure of NMN synthetase from Francisella tularensis==
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The line below this paragraph, containing "STRUCTURE_3fiu", creates the "Structure Box" on the page.
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<StructureSection load='3fiu' size='340' side='right'caption='[[3fiu]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3fiu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Francisella_tularensis_subsp._holarctica_LVS Francisella tularensis subsp. holarctica LVS]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FIU FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
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{{STRUCTURE_3fiu| PDB=3fiu | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fiu OCA], [https://pdbe.org/3fiu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fiu RCSB], [https://www.ebi.ac.uk/pdbsum/3fiu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fiu ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fiu_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fiu ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Enzymes involved in the last 2 steps of nicotinamide adenine dinucleotide (NAD) cofactor biosynthesis, which catalyze the adenylylation of the nicotinic acid mononucleotide (NaMN) precursor to nicotinic acid dinucleotide (NaAD) followed by its amidation to NAD, constitute promising drug targets for the development of new antibiotics. These enzymes, NaMN adenylyltransferase (gene nadD) and NAD synthetase (gene nadE), respectively, are indispensable and conserved in nearly all bacterial pathogens. However, a comparative genome analysis of Francisella tularensis allowed us to predict the existence of an alternative route of NAD synthesis in this category A priority pathogen, the causative agent of tularaemia. In this route, the amidation of NaMN to nicotinamide mononucleotide (NMN) occurs before the adenylylation reaction, which converts this alternative intermediate to the NAD cofactor. The first step is catalyzed by NMN synthetase, which was identified and characterized in this study. A crystal structure of this enzyme, a divergent member of the NadE family, was solved at 1.9-A resolution in complex with reaction products, providing a rationale for its unusual substrate preference for NaMN over NaAD. The second step is performed by NMN adenylyltransferase of the NadM family. Here, we report validation of the predicted route (NaMN --&gt; NMN --&gt; NAD) in F. tularensis including mathematical modeling, in vitro reconstitution, and in vivo metabolite analysis in comparison with a canonical route (NaMN --&gt; NaAD --&gt; NAD) of NAD biosynthesis as represented by another deadly bacterial pathogen, Bacillus anthracis.
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===Structure of NMN synthetase from Francisella tularensis===
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Nicotinamide mononucleotide synthetase is the key enzyme for an alternative route of NAD biosynthesis in Francisella tularensis.,Sorci L, Martynowski D, Rodionov DA, Eyobo Y, Zogaj X, Klose KE, Nikolaev EV, Magni G, Zhang H, Osterman AL Proc Natl Acad Sci U S A. 2009 Feb 9. PMID:19204287<ref>PMID:19204287</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3fiu" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19204287}}, adds the Publication Abstract to the page
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*[[NAD synthase|NAD synthase]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19204287 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19204287}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Francisella tularensis subsp. holarctica LVS]]
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3FIU is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Francisella_tularensis_subsp._holarctica_lvs Francisella tularensis subsp. holarctica lvs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIU OCA].
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[[Category: Large Structures]]
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[[Category: Eyobo Y]]
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==Reference==
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[[Category: Martynowski D]]
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<ref group="xtra">PMID:19204287</ref><references group="xtra"/>
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[[Category: Osterman AL]]
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[[Category: Francisella tularensis subsp. holarctica lvs]]
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[[Category: Sorci L]]
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[[Category: Eyobo, Y.]]
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[[Category: Zhang H]]
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[[Category: Martynowski, D.]]
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[[Category: Osterman, A L.]]
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[[Category: Sorci, L.]]
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[[Category: Zhang, H.]]
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[[Category: Adenine nucleotide alpha hydrolase-like]]
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[[Category: Atp-binding]]
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[[Category: Ligase]]
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[[Category: Nad]]
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[[Category: Nucleotide-binding]]
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[[Category: Rossman fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 18 20:13:52 2009''
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Current revision

Structure of NMN synthetase from Francisella tularensis

PDB ID 3fiu

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