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3ghj
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3ghj is ON HOLD Authors: Sureshan, V., Deshpande, C., Harrop, S.J., Kudrytska, M., Koenig, J.E., Evdokimova, E., Kim, Y., Edwards, A., Savchenko, A....) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure from the mobile metagenome of Halifax Harbour Sewage Outfall: Integron Cassette Protein HFX_CASS4== | |
| - | + | <StructureSection load='3ghj' size='340' side='right'caption='[[3ghj]], [[Resolution|resolution]] 1.47Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3ghj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Uncultivated_bacterium Uncultivated bacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GHJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GHJ FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ORF1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=77133 uncultivated bacterium])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ghj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ghj OCA], [https://pdbe.org/3ghj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ghj RCSB], [https://www.ebi.ac.uk/pdbsum/3ghj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ghj ProSAT], [https://www.topsan.org/Proteins/MCSG/3ghj TOPSAN]</span></td></tr> | |
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gh/3ghj_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ghj ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Uncultivated bacterium]] | ||
| + | [[Category: Curmi, P M.G]] | ||
| + | [[Category: Deshpande, C]] | ||
| + | [[Category: Doolittle, W F]] | ||
| + | [[Category: Edwards, A M]] | ||
| + | [[Category: Evdokimova, E]] | ||
| + | [[Category: Harrop, S J]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Kim, Y]] | ||
| + | [[Category: Koenig, J E]] | ||
| + | [[Category: Kudritska, M]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Mabbutt, B C]] | ||
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Stokes, H W]] | ||
| + | [[Category: Sureshan, V]] | ||
| + | [[Category: Integron cassette protein]] | ||
| + | [[Category: Mcsg]] | ||
| + | [[Category: Mobile metagenome]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Unknown function]] | ||
Current revision
Crystal structure from the mobile metagenome of Halifax Harbour Sewage Outfall: Integron Cassette Protein HFX_CASS4
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Categories: Large Structures | Uncultivated bacterium | Curmi, P M.G | Deshpande, C | Doolittle, W F | Edwards, A M | Evdokimova, E | Harrop, S J | Joachimiak, A | Kim, Y | Koenig, J E | Kudritska, M | Structural genomic | Mabbutt, B C | Savchenko, A | Stokes, H W | Sureshan, V | Integron cassette protein | Mcsg | Mobile metagenome | PSI, Protein structure initiative | Unknown function
