2jfc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:46, 13 December 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2jfc.png|left|200px]]
 
-
<!--
+
==M144L mutant of Nitrite Reductase from Alcaligenes xylosoxidans in space group P212121==
-
The line below this paragraph, containing "STRUCTURE_2jfc", creates the "Structure Box" on the page.
+
<StructureSection load='2jfc' size='340' side='right'caption='[[2jfc]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2jfc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JFC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JFC FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-
{{STRUCTURE_2jfc| PDB=2jfc | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jfc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jfc OCA], [https://pdbe.org/2jfc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jfc RCSB], [https://www.ebi.ac.uk/pdbsum/2jfc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jfc ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/O68601_ALCXX O68601_ALCXX]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jf/2jfc_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jfc ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Cu-containing nitrite reductases (NiRs) perform the reduction of nitrite to NO via an ordered mechanism in which the delivery of a proton and an electron to the catalytic type 2 Cu site is highly orchestrated. Electron transfer from a redox partner protein, azurin or pseudoazurin, to the type 1 Cu site is assumed to occur through the formation of a protein-protein complex. We report here a new crystal form in space group P2(1)2(1)2(1) of the Met144Leu mutant of NiR from Alcaligenes xylosoxidans (AxNiR), revealing a head-to-head packing motif involving residues around the hydrophobic patch of domain 1. Superposition of the structure of azurin II with that of domain 1 of one of the Met144Leu molecules provides the first glimpse of an azurin II-NiR protein-protein complex. Mutations of two of the residues of AxNiR, Trp138His (Barrett et al. in Biochemistry 43:16311-16319, 2004) and Met87Leu, highlighted in the AxNiR-azurin complex, results in substantially decreased activity when azurin is used as the electron donor instead of methyl viologen, providing direct evidence for the importance of this region for complex formation.
-
===M144L MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS IN SPACE GROUP P212121===
+
The structure of the Met144Leu mutant of copper nitrite reductase from Alcaligenes xylosoxidans provides the first glimpse of a protein-protein complex with azurin II.,Paraskevopoulos K, Hough MA, Sawers RG, Eady RR, Hasnain SS J Biol Inorg Chem. 2007 Aug;12(6):789-96. Epub 2007 May 15. PMID:17503096<ref>PMID:17503096</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2jfc" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_17503096}}, adds the Publication Abstract to the page
+
*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 17503096 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_17503096}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
2JFC is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JFC OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:17503096</ref><references group="xtra"/>
+
[[Category: Achromobacter xylosoxidans]]
[[Category: Achromobacter xylosoxidans]]
-
[[Category: Eady, R R.]]
+
[[Category: Large Structures]]
-
[[Category: Hasnain, S S.]]
+
[[Category: Eady RR]]
-
[[Category: Hough, M A.]]
+
[[Category: Hasnain SS]]
-
[[Category: Paraskevopoulos, K.]]
+
[[Category: Hough MA]]
-
[[Category: Sawers, R G.]]
+
[[Category: Paraskevopoulos K]]
-
[[Category: Alcaligenes xylosoxidan]]
+
[[Category: Sawers RG]]
-
[[Category: Complex formation]]
+
-
[[Category: Copper]]
+
-
[[Category: Denitrification]]
+
-
[[Category: Electron transfer. nitrite reductase]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Mutant]]
+
-
[[Category: Oxidoreductase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 22 11:18:34 2009''
+

Current revision

M144L mutant of Nitrite Reductase from Alcaligenes xylosoxidans in space group P212121

PDB ID 2jfc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools