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2nxf
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2nxf" size="450" color="white" frame="true" align="right" spinBox="true" caption="2nxf, resolution 1.700Å" /> '''Crystal Structure o...) |
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| - | [[Image:2nxf.gif|left|200px]]<br /><applet load="2nxf" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2nxf, resolution 1.700Å" /> | ||
| - | '''Crystal Structure of a dimetal phosphatase from Danio rerio LOC 393393'''<br /> | ||
| - | == | + | ==Crystal Structure of a dimetal phosphatase from Danio rerio LOC 393393== |
| - | + | <StructureSection load='2nxf' size='340' side='right'caption='[[2nxf]], [[Resolution|resolution]] 1.70Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2nxf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NXF FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nxf OCA], [https://pdbe.org/2nxf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nxf RCSB], [https://www.ebi.ac.uk/pdbsum/2nxf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nxf ProSAT], [https://www.topsan.org/Proteins/CESG/2nxf TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/ADPRM_DANRE ADPRM_DANRE] Hydrolyzes ADP-ribose, IDP-ribose, CDP-glycerol, CDP-choline and CDP-ethanolamine, but not other non-reducing ADP-sugars or CDP-glucose. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nx/2nxf_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nxf ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Danio rerio]] | [[Category: Danio rerio]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Bingman | + | [[Category: Bingman CA]] |
| - | [[Category: Bitto | + | [[Category: Bitto E]] |
| - | [[Category: | + | [[Category: McCoy JG]] |
| - | [[Category: Jr | + | [[Category: Phillips Jr GN]] |
| - | + | [[Category: Wesenberg GE]] | |
| - | [[Category: Wesenberg | + | |
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Current revision
Crystal Structure of a dimetal phosphatase from Danio rerio LOC 393393
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