2ce6

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{{Seed}}
 
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[[Image:2ce6.png|left|200px]]
 
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==Structure of Helix Pomatia agglutinin with no ligands==
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The line below this paragraph, containing "STRUCTURE_2ce6", creates the "Structure Box" on the page.
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<StructureSection load='2ce6' size='340' side='right'caption='[[2ce6]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2ce6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helix_pomatia Helix pomatia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CE6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CE6 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ce6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ce6 OCA], [https://pdbe.org/2ce6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ce6 RCSB], [https://www.ebi.ac.uk/pdbsum/2ce6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ce6 ProSAT]</span></td></tr>
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{{STRUCTURE_2ce6| PDB=2ce6 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q2F1K8_HELPO Q2F1K8_HELPO]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/2ce6_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ce6 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Helix pomatia agglutinin (HPA) is a N-acetylgalactosamine (GalNAc) binding lectin found in the albumen gland of the roman snail. As a constituent of perivitelline fluid, HPA protects fertilized eggs from bacteria and is part of the innate immunity system of the snail. The peptide sequence deduced from gene cloning demonstrates that HPA belongs to a family of carbohydrate-binding proteins recently identified in several invertebrates. This domain is also present in discoidin from the slime mold Dictyostelium discoideum. Investigation of the lectin specificity was performed with the use of glycan arrays, demonstrating that several GalNAc-containing oligosaccharides are bound and rationalizing the use of this lectin as a cancer marker. Titration microcalorimetry performed on the interaction between HPA and GalNAc indicates an affinity in the 10(-4) M range with an enthalpy-driven binding mechanism. The crystal structure of HPA demonstrates the occurrence of a new beta-sandwich lectin fold. The hexameric quaternary state was never observed previously for a lectin. The high resolution structure complex of HPA with GalNAc characterizes a new carbohydrate binding site and rationalizes the observed preference for alphaGalNAc-containing oligosaccharides.
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===STRUCTURE OF HELIX POMATIA AGGLUTININ WITH NO LIGANDS===
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Biochemical and structural analysis of Helix pomatia agglutinin. A hexameric lectin with a novel fold.,Sanchez JF, Lescar J, Chazalet V, Audfray A, Gagnon J, Alvarez R, Breton C, Imberty A, Mitchell EP J Biol Chem. 2006 Jul 21;281(29):20171-80. Epub 2006 May 16. PMID:16704980<ref>PMID:16704980</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2ce6" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_16704980}}, adds the Publication Abstract to the page
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*[[Agglutinin 3D structures|Agglutinin 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 16704980 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_16704980}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2CE6 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Helix_pomatia Helix pomatia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CE6 OCA].
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==Reference==
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<ref group="xtra">PMID:16704980</ref><references group="xtra"/>
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[[Category: Helix pomatia]]
[[Category: Helix pomatia]]
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[[Category: Audfray, A.]]
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[[Category: Large Structures]]
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[[Category: Breton, C.]]
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[[Category: Audfray A]]
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[[Category: Chazalet, V.]]
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[[Category: Breton C]]
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[[Category: Gagnon, J.]]
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[[Category: Chazalet V]]
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[[Category: Gautier, C.]]
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[[Category: Gagnon J]]
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[[Category: Imberty, A.]]
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[[Category: Gautier C]]
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[[Category: Lescar, J.]]
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[[Category: Imberty A]]
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[[Category: Mitchell, E P.]]
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[[Category: Lescar J]]
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[[Category: Sanchez, J F.]]
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[[Category: Mitchell EP]]
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[[Category: Helix pomatia]]
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[[Category: Sanchez J-F]]
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[[Category: Lectin]]
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[[Category: Snail]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 22 11:37:07 2009''
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Current revision

Structure of Helix Pomatia agglutinin with no ligands

PDB ID 2ce6

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