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2tmd

From Proteopedia

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{{Seed}}
 
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[[Image:2tmd.png|left|200px]]
 
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<!--
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==CORRELATION OF X-RAY DEDUCED AND EXPERIMENTAL AMINO ACID SEQUENCES OF TRIMETHYLAMINE DEHYDROGENASE==
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The line below this paragraph, containing "STRUCTURE_2tmd", creates the "Structure Box" on the page.
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<StructureSection load='2tmd' size='340' side='right'caption='[[2tmd]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2tmd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylophilus_methylotrophus_W3A1 Methylophilus methylotrophus W3A1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2TMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2TMD FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
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{{STRUCTURE_2tmd| PDB=2tmd | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2tmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2tmd OCA], [https://pdbe.org/2tmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2tmd RCSB], [https://www.ebi.ac.uk/pdbsum/2tmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2tmd ProSAT]</span></td></tr>
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</table>
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===CORRELATION OF X-RAY DEDUCED AND EXPERIMENTAL AMINO ACID SEQUENCES OF TRIMETHYLAMINE DEHYDROGENASE===
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== Function ==
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[https://www.uniprot.org/uniprot/DHTM_METME DHTM_METME]
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== Evolutionary Conservation ==
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<!--
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_1551870}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 1551870 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tm/2tmd_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_1551870}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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2TMD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methylophilus_methylotrophus_w3a1 Methylophilus methylotrophus w3a1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2TMD OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2tmd ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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Correlation of x-ray deduced and experimental amino acid sequences of trimethylamine dehydrogenase., Barber MJ, Neame PJ, Lim LW, White S, Matthews FS, J Biol Chem. 1992 Apr 5;267(10):6611-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/1551870 1551870]
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</StructureSection>
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[[Category: Methylophilus methylotrophus w3a1]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Methylophilus methylotrophus W3A1]]
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[[Category: Trimethylamine dehydrogenase]]
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[[Category: Lim LW]]
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[[Category: Pdbx_ordinal=, <PDBx:audit_author.]]
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[[Category: Mathews FS]]
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[[Category: Oxidoreductase]]
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[[Category: White S]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 20:18:51 2009''
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Current revision

CORRELATION OF X-RAY DEDUCED AND EXPERIMENTAL AMINO ACID SEQUENCES OF TRIMETHYLAMINE DEHYDROGENASE

PDB ID 2tmd

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