3dxl
From Proteopedia
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- | {{Seed}} | ||
- | [[Image:3dxl.png|left|200px]] | ||
- | < | + | ==Crystal structure of AeD7 from Aedes Aegypti== |
- | + | <StructureSection load='3dxl' size='340' side='right'caption='[[3dxl]], [[Resolution|resolution]] 1.30Å' scene=''> | |
- | You may | + | == Structural highlights == |
- | + | <table><tr><td colspan='2'>[[3dxl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aedae Aedae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DXL FirstGlance]. <br> | |
- | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | |
- | -- | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">D7 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7159 AEDAE])</td></tr> |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxl OCA], [https://pdbe.org/3dxl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dxl RCSB], [https://www.ebi.ac.uk/pdbsum/3dxl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dxl ProSAT]</span></td></tr> | |
+ | </table> | ||
+ | == Function == | ||
+ | [[https://www.uniprot.org/uniprot/ALL2_AEDAE ALL2_AEDAE]] Thought to be involved in blood-feeding.<ref>PMID:2052024</ref> | ||
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxl_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dxl ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The mosquito D7 salivary proteins are encoded by a multigene family related to the arthropod odorant-binding protein (OBP) superfamily. Forms having either one or two OBP domains are found in mosquito saliva. Four single-domain and one two-domain D7 proteins from Anopheles gambiae and Aedes aegypti (AeD7), respectively, were shown to bind biogenic amines with high affinity and with a stoichiometry of one ligand per protein molecule. Sequence comparisons indicated that only the C-terminal domain of AeD7 is homologous to the single-domain proteins from A. gambiae, suggesting that the N-terminal domain may bind a different class of ligands. Here, we describe the 3D structure of AeD7 and examine the ligand-binding characteristics of the N- and C-terminal domains. Isothermal titration calorimetry and ligand complex crystal structures show that the N-terminal domain binds cysteinyl leukotrienes (cysLTs) with high affinities (50-60 nM) whereas the C-terminal domain binds biogenic amines. The lipid chain of the cysLT binds in a hydrophobic pocket of the N-terminal domain, whereas binding of norepinephrine leads to an ordering of the C-terminal portion of the C-terminal domain into an alpha-helix that, along with rotations of Arg-176 and Glu-268 side chains, acts to bury the bound ligand. | ||
- | + | Multifunctionality and mechanism of ligand binding in a mosquito antiinflammatory protein.,Calvo E, Mans BJ, Ribeiro JM, Andersen JF Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3728-33. Epub 2009 Feb 20. PMID:19234127<ref>PMID:19234127</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | + | </div> | |
- | + | <div class="pdbe-citations 3dxl" style="background-color:#fffaf0;"></div> | |
- | + | == References == | |
- | --> | + | <references/> |
- | + | __TOC__ | |
- | + | </StructureSection> | |
- | == | + | [[Category: Aedae]] |
- | + | [[Category: Large Structures]] | |
- | + | [[Category: Andersen, J F]] | |
- | + | [[Category: Calvo, E]] | |
- | + | [[Category: Mans, B J]] | |
- | [[Category: | + | [[Category: Ribeiro, J M]] |
- | [[Category: | + | |
- | [[Category: | + | |
[[Category: All-helical]] | [[Category: All-helical]] | ||
[[Category: Allergen]] | [[Category: Allergen]] | ||
[[Category: Odorant-binding protein]] | [[Category: Odorant-binding protein]] | ||
[[Category: Secreted]] | [[Category: Secreted]] | ||
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- | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 20:46:09 2009'' |
Current revision
Crystal structure of AeD7 from Aedes Aegypti
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