3ggo

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{{Seed}}
 
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[[Image:3ggo.png|left|200px]]
 
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==Crystal structure of prephenate dehydrogenase from A. aeolicus with HPP and NADH==
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The line below this paragraph, containing "STRUCTURE_3ggo", creates the "Structure Box" on the page.
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<StructureSection load='3ggo' size='340' side='right'caption='[[3ggo]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3ggo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GGO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GGO FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ENO:3-(4-HYDROXY-PHENYL)PYRUVIC+ACID'>ENO</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene></td></tr>
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{{STRUCTURE_3ggo| PDB=3ggo | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ggo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ggo OCA], [https://pdbe.org/3ggo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ggo RCSB], [https://www.ebi.ac.uk/pdbsum/3ggo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ggo ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/O67636_AQUAE O67636_AQUAE]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/3ggo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ggo ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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TyrA proteins belong to a family of dehydrogenases that are dedicated to l-tyrosine biosynthesis. The three TyrA subclasses are distinguished by their substrate specificities, namely the prephenate dehydrogenases, the arogenate dehydrogenases, and the cyclohexadienyl dehydrogenases, which utilize prephenate, l-arogenate, or both substrates, respectively. The molecular mechanism responsible for TyrA substrate selectivity and regulation is unknown. To further our understanding of TyrA-catalyzed reactions, we have determined the crystal structures of Aquifex aeolicus prephenate dehydrogenase bound with NAD(+) plus either 4-hydroxyphenylpyuvate, 4-hydroxyphenylpropionate, or l-tyrosine and have used these structures as guides to target active site residues for site-directed mutagenesis. From a combination of mutational and structural analyses, we have demonstrated that His-147 and Arg-250 are key catalytic and binding groups, respectively, and Ser-126 participates in both catalysis and substrate binding through the ligand 4-hydroxyl group. The crystal structure revealed that tyrosine, a known inhibitor, binds directly to the active site of the enzyme and not to an allosteric site. The most interesting finding though, is that mutating His-217 relieved the inhibitory effect of tyrosine on A. aeolicus prephenate dehydrogenase. The identification of a tyrosine-insensitive mutant provides a novel avenue for designing an unregulated enzyme for application in metabolic engineering.
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===Crystal structure of prephenate dehydrogenase from A. aeolicus with HPP and NADH===
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The crystal structure of Aquifex aeolicus prephenate dehydrogenase reveals the mode of tyrosine inhibition.,Sun W, Shahinas D, Bonvin J, Hou W, Kimber MS, Turnbull J, Christendat D J Biol Chem. 2009 May 8;284(19):13223-32. Epub 2009 Mar 10. PMID:19279014<ref>PMID:19279014</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19279014}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3ggo" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19279014 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19279014}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3GGO is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GGO OCA].
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==Reference==
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<ref group="xtra">PMID:19279014</ref><references group="xtra"/>
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[[Category: Aquifex aeolicus]]
[[Category: Aquifex aeolicus]]
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[[Category: Christendat, D.]]
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[[Category: Large Structures]]
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[[Category: Shahinas, D.]]
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[[Category: Christendat D]]
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[[Category: Sun, W.]]
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[[Category: Shahinas D]]
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[[Category: Alpha-beta]]
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[[Category: Sun W]]
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[[Category: Hpp]]
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[[Category: Nadh]]
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[[Category: Oxidoreductase]]
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[[Category: Tyra]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 2 15:30:35 2009''
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Current revision

Crystal structure of prephenate dehydrogenase from A. aeolicus with HPP and NADH

PDB ID 3ggo

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