This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gpk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3gpk", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (07:51, 16 March 2022) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3gpk.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of PpiC-type peptidyl-prolyl cis-trans isomerase domain at 1.55A resolution.==
-
The line below this paragraph, containing "STRUCTURE_3gpk", creates the "Structure Box" on the page.
+
<StructureSection load='3gpk' size='340' side='right'caption='[[3gpk]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GPK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GPK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gpk OCA], [https://pdbe.org/3gpk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gpk RCSB], [https://www.ebi.ac.uk/pdbsum/3gpk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gpk ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3gpk TOPSAN]</span></td></tr>
-
-->
+
</table>
-
{{STRUCTURE_3gpk| PDB=3gpk | SCENE= }}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
===Crystal Structure of PpiC-type peptidyl-prolyl cis-trans isomerase domain at 1.55A resolution.===
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/3gpk_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
3GPK is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_dsm_12444 Novosphingobium aromaticivorans dsm 12444]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GPK OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Novosphingobium aromaticivorans dsm 12444]]
+
</jmolCheckbox>
-
[[Category: Peptidylprolyl isomerase]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gpk ConSurf].
-
[[Category: Burley,S K.]]
+
<div style="clear:both"></div>
-
[[Category: Eswaramoorthy,S.]]
+
__TOC__
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Satyanarayana,L.]]
+
[[Category: Large Structures]]
-
[[Category: Swaminathan,S.]]
+
[[Category: Burley SK]]
-
[[Category: 11189o3]]
+
[[Category: Eswaramoorthy S]]
-
[[Category: Chaperone]]
+
[[Category: Satyanarayana L]]
-
[[Category: Isomerase]]
+
[[Category: Swaminathan S]]
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Peptidyl-prolyl cis-trans isomerase]]
+
-
[[Category: Ppiase domain]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi2.]]
+
-
[[Category: Rotamase]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 2 16:15:58 2009''
+

Current revision

Crystal Structure of PpiC-type peptidyl-prolyl cis-trans isomerase domain at 1.55A resolution.

PDB ID 3gpk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gpk"
Personal tools