2oyn

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(New page: 200px<br /><applet load="2oyn" size="450" color="white" frame="true" align="right" spinBox="true" caption="2oyn, resolution 1.850&Aring;" /> '''Crystal structure o...)
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[[Image:2oyn.jpg|left|200px]]<br /><applet load="2oyn" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2oyn, resolution 1.850&Aring;" />
 
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'''Crystal structure of CDP-bound protein MJ0056 from Methanococcus jannaschii, Pfam DUF120'''<br />
 
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==About this Structure==
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==Crystal structure of CDP-bound protein MJ0056 from Methanococcus jannaschii, Pfam DUF120==
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2OYN is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii] with NA and CDP as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2OYN OCA].
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<StructureSection load='2oyn' size='340' side='right'caption='[[2oyn]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
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[[Category: Methanocaldococcus jannaschii]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[2oyn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OYN FirstGlance]. <br>
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[[Category: Almo, S.C.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
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[[Category: Bain, K.T.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CDP:CYTIDINE-5-DIPHOSPHATE'>CDP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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[[Category: Bonanno, J.B.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyn OCA], [https://pdbe.org/2oyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oyn RCSB], [https://www.ebi.ac.uk/pdbsum/2oyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oyn ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2oyn TOPSAN]</span></td></tr>
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[[Category: Burley, S.K.]]
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</table>
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[[Category: Dickey, M.]]
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== Function ==
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[[Category: Lau, C.]]
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[https://www.uniprot.org/uniprot/RIFK_METJA RIFK_METJA] Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN). Can also utilize UTP as the phosphate donor, although less efficiently, and it is unclear if ATP and GTP can also serve as substrates (PubMed:18245297) or not (PubMed:18073108).<ref>PMID:18073108</ref> <ref>PMID:18245297</ref>
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[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
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== Evolutionary Conservation ==
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[[Category: Romero, R.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Sauder, M.J.]]
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Check<jmol>
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[[Category: Smith, D.]]
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<jmolCheckbox>
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[[Category: Wasserman, S.]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oyn_consurf.spt"</scriptWhenChecked>
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[[Category: CDP]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: NA]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: new york structural genomix research consortium]]
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</jmolCheckbox>
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[[Category: nysgxrc]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oyn ConSurf].
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[[Category: protein structure initiative]]
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<div style="clear:both"></div>
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[[Category: psi-2]]
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== References ==
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[[Category: structural genomics]]
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<references/>
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[[Category: unknown function]]
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__TOC__
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</StructureSection>
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 13:21:59 2007''
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[[Category: Large Structures]]
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[[Category: Methanocaldococcus jannaschii DSM 2661]]
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[[Category: Almo SC]]
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[[Category: Bain KT]]
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[[Category: Bonanno JB]]
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[[Category: Burley SK]]
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[[Category: Dickey M]]
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[[Category: Lau C]]
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[[Category: Romero R]]
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[[Category: Sauder JM]]
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[[Category: Smith D]]
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[[Category: Wasserman S]]

Current revision

Crystal structure of CDP-bound protein MJ0056 from Methanococcus jannaschii, Pfam DUF120

PDB ID 2oyn

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