2p3e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2p3e" size="450" color="white" frame="true" align="right" spinBox="true" caption="2p3e, resolution 1.99&Aring;" /> '''Crystal structure of...)
Current revision (10:53, 30 August 2023) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p3e.gif|left|200px]]<br /><applet load="2p3e" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2p3e, resolution 1.99&Aring;" />
 
-
'''Crystal structure of AQ1208 from Aquifex aeolicus'''<br />
 
-
==About this Structure==
+
==Crystal structure of AQ1208 from Aquifex aeolicus==
-
2P3E is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Active as [http://en.wikipedia.org/wiki/Diaminopimelate_decarboxylase Diaminopimelate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.20 4.1.1.20] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA].
+
<StructureSection load='2p3e' size='340' side='right'caption='[[2p3e]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
-
[[Category: Aquifex aeolicus]]
+
== Structural highlights ==
-
[[Category: Diaminopimelate decarboxylase]]
+
<table><tr><td colspan='2'>[[2p3e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P3E FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
-
[[Category: Chen, L.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3e OCA], [https://pdbe.org/2p3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p3e RCSB], [https://www.ebi.ac.uk/pdbsum/2p3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p3e ProSAT], [https://www.topsan.org/Proteins/RSGI/2p3e TOPSAN]</span></td></tr>
-
[[Category: Ebihara, A.]]
+
</table>
-
[[Category: Fu, Z-Q.]]
+
== Function ==
-
[[Category: II, J.T.Swindell.]]
+
[https://www.uniprot.org/uniprot/DCDA_AQUAE DCDA_AQUAE] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120]
-
[[Category: Kuramitsu, S.]]
+
== Evolutionary Conservation ==
-
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Rose, J.P.]]
+
Check<jmol>
-
[[Category: SECSG, Southeast.Collaboratory.for.Structural.Genomics.]]
+
<jmolCheckbox>
-
[[Category: Shinkai, A.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/2p3e_consurf.spt"</scriptWhenChecked>
-
[[Category: Wang, B-C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Yokoyama, S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Zhu, J.]]
+
</jmolCheckbox>
-
[[Category: aq1208]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p3e ConSurf].
-
[[Category: aquifex aeolicus]]
+
<div style="clear:both"></div>
-
[[Category: department of biological sciences osaka university]]
+
__TOC__
-
[[Category: department of biophysics and biochemistry university of tokyo]]
+
</StructureSection>
-
[[Category: protein structure initiative]]
+
[[Category: Aquifex aeolicus VF5]]
-
[[Category: psi]]
+
[[Category: Large Structures]]
-
[[Category: riken genomic sciences center]]
+
[[Category: Chen L]]
-
[[Category: riken spring-8 center]]
+
[[Category: Ebihara A]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Fu Z-Q]]
-
[[Category: rsgi]]
+
[[Category: Kuramitsu S]]
-
[[Category: secsg]]
+
[[Category: Rose JP]]
-
[[Category: southeast collaboratory for structural genomics]]
+
[[Category: Shinkai A]]
-
 
+
[[Category: Swindell II JT]]
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 13:24:24 2007''
+
[[Category: Wang B-C]]
 +
[[Category: Yokoyama S]]
 +
[[Category: Zhu J]]

Current revision

Crystal structure of AQ1208 from Aquifex aeolicus

PDB ID 2p3e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2p3e"
Personal tools