This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3guy
From Proteopedia
(Difference between revisions)
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3guy", creates the "Structure Box" on the page. You may change the PDB parameter (which se...) |
|||
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3guy.jpg|left|200px]] | ||
| - | + | ==Crystal structure of a short-chain dehydrogenase/reductase from Vibrio parahaemolyticus== | |
| - | + | <StructureSection load='3guy' size='340' side='right'caption='[[3guy]], [[Resolution|resolution]] 1.90Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3guy]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_AQ3810 Vibrio parahaemolyticus AQ3810]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GUY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GUY FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3guy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3guy OCA], [https://pdbe.org/3guy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3guy RCSB], [https://www.ebi.ac.uk/pdbsum/3guy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3guy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3guy TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | == | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gu/3guy_consurf.spt"</scriptWhenChecked> |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | [ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[ | + | </jmolCheckbox> |
| - | [[ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3guy ConSurf]. |
| - | [[ | + | <div style="clear:both"></div> |
| - | [[ | + | __TOC__ |
| - | [ | + | </StructureSection> |
| - | [[ | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Vibrio parahaemolyticus AQ3810]] |
| - | [[Category: | + | [[Category: Almo SC]] |
| - | [[Category: | + | [[Category: Bain KT]] |
| - | [[Category: | + | [[Category: Bonanno JB]] |
| - | [[Category: | + | [[Category: Burley SK]] |
| - | [[Category: | + | [[Category: Freeman J]] |
| - | [[Category: | + | [[Category: Miller S]] |
| - | [[Category: | + | [[Category: Patskovsky Y]] |
| - | [[Category: | + | [[Category: Sampathkumar P]] |
| - | [[Category: | + | [[Category: Sauder JM]] |
| - | [[Category: | + | [[Category: Wasserman S]] |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a short-chain dehydrogenase/reductase from Vibrio parahaemolyticus
| |||||||||||
