This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gv0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3gv0", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (07:55, 16 March 2022) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3gv0.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of LacI family transcription regulator from Agrobacterium tumefaciens==
-
The line below this paragraph, containing "STRUCTURE_3gv0", creates the "Structure Box" on the page.
+
<StructureSection load='3gv0' size='340' side='right'caption='[[3gv0]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GV0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GV0 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gv0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gv0 OCA], [https://pdbe.org/3gv0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gv0 RCSB], [https://www.ebi.ac.uk/pdbsum/3gv0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gv0 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3gv0 TOPSAN]</span></td></tr>
-
-->
+
</table>
-
{{STRUCTURE_3gv0| PDB=3gv0 | SCENE= }}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
===Crystal structure of LacI family transcription regulator from Agrobacterium tumefaciens===
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gv0_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
3GV0 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GV0 OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Agrobacterium tumefaciens str. c58]]
+
</jmolCheckbox>
-
[[Category: Bagaria, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gv0 ConSurf].
-
[[Category: Burley, S K.]]
+
<div style="clear:both"></div>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Swaminathan, S.]]
+
</StructureSection>
-
[[Category: 11224e]]
+
[[Category: Large Structures]]
-
[[Category: Dna-binding]]
+
[[Category: Bagaria A]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: Burley SK]]
-
[[Category: New york structural genomix research consortium]]
+
[[Category: Swaminathan S]]
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-ii]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Transcription regulator]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 15 10:37:35 2009''
+

Current revision

Crystal structure of LacI family transcription regulator from Agrobacterium tumefaciens

PDB ID 3gv0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools