This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p3c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:30, 3 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2p3c.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the subtype F wild type HIV protease complexed with TL-3 inhibitor==
-
The line below this paragraph, containing "STRUCTURE_2p3c", creates the "Structure Box" on the page.
+
<StructureSection load='2p3c' size='340' side='right'caption='[[2p3c]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2p3c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P3C FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3TL:BENZYL+[(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-DIBENZYL-8,9-DIHYDROXY-1,16-DIMETHYL-4,13-BIS(1-METHYLETHYL)-2,5,12,15,18-PENTAOXO-20-PHENYL-19-OXA-3,6,11,14,17-PENTAAZAICOS-1-YL]CARBAMATE'>3TL</scene>, <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>
-
{{STRUCTURE_2p3c| PDB=2p3c | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p3c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3c OCA], [https://pdbe.org/2p3c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p3c RCSB], [https://www.ebi.ac.uk/pdbsum/2p3c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p3c ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6Q004_9HIV1 Q6Q004_9HIV1]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/2p3c_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p3c ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of the subtype F wild type HIV protease complexed with TL-3 inhibitor===
+
==See Also==
-
 
+
*[[Immunodeficiency virus protease 3D structures|Immunodeficiency virus protease 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17467738}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 17467738 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_17467738}}
+
-
 
+
-
==About this Structure==
+
-
2P3C is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3C OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:17467738</ref><references group="xtra"/>
+
-
[[Category: HIV-1 retropepsin]]
+
[[Category: Human immunodeficiency virus 1]]
[[Category: Human immunodeficiency virus 1]]
-
[[Category: Gustchina, A.]]
+
[[Category: Large Structures]]
-
[[Category: Krauchenco, S.]]
+
[[Category: Gustchina A]]
-
[[Category: Martins, N H.]]
+
[[Category: Krauchenco S]]
-
[[Category: Polikarpov, I.]]
+
[[Category: Martins NH]]
-
[[Category: Sanches, M.]]
+
[[Category: Polikarpov I]]
-
[[Category: Wlodawer, A.]]
+
[[Category: Sanches M]]
-
[[Category: Hydrolase]]
+
[[Category: Wlodawer A]]
-
[[Category: Non-b hiv protease]]
+
-
[[Category: Protease-inhibitor complex]]
+
-
[[Category: Tl-3 inhibitor]]
+
-
[[Category: Wild type subtype f hiv protease]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Apr 19 08:50:51 2009''
+

Current revision

Crystal Structure of the subtype F wild type HIV protease complexed with TL-3 inhibitor

PDB ID 2p3c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools