This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gpi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:55, 21 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3gpi.jpg|left|200px]]
 
-
<!--
+
==Structure of putative NAD-dependent epimerase/dehydratase from methylobacillus flagellatus==
-
The line below this paragraph, containing "STRUCTURE_3gpi", creates the "Structure Box" on the page.
+
<StructureSection load='3gpi' size='340' side='right'caption='[[3gpi]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3gpi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylobacillus_flagellatus_KT Methylobacillus flagellatus KT]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GPI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GPI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.44&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
{{STRUCTURE_3gpi| PDB=3gpi | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gpi OCA], [https://pdbe.org/3gpi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gpi RCSB], [https://www.ebi.ac.uk/pdbsum/3gpi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gpi ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3gpi TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Structure of putative NAD-dependent epimerase/dehydratase from methylobacillus flagellatus===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q1GZM5_METFK Q1GZM5_METFK]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3GPI is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Methylobacillus_flagellatus_kt Methylobacillus flagellatus kt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GPI OCA].
+
Check<jmol>
-
[[Category: Methylobacillus flagellatus kt]]
+
<jmolCheckbox>
-
[[Category: Almo, S C.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/3gpi_consurf.spt"</scriptWhenChecked>
-
[[Category: Burley, S K.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Morano, C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Ramagopal, U A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gpi ConSurf].
-
[[Category: Dehydratase]]
+
<div style="clear:both"></div>
-
[[Category: Epimerase]]
+
__TOC__
-
[[Category: New york sgx research center for structural genomic]]
+
</StructureSection>
-
[[Category: Nysgxrc]]
+
[[Category: Large Structures]]
-
[[Category: Protein structure initiative]]
+
[[Category: Methylobacillus flagellatus KT]]
-
[[Category: Psi-2]]
+
[[Category: Almo SC]]
-
[[Category: Structural genomic]]
+
[[Category: Burley SK]]
-
[[Category: Unknown function]]
+
[[Category: Morano C]]
-
 
+
[[Category: Ramagopal UA]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 22 11:40:50 2009''
+

Current revision

Structure of putative NAD-dependent epimerase/dehydratase from methylobacillus flagellatus

PDB ID 3gpi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gpi"
Personal tools