3fgq

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{{Seed}}
 
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[[Image:3fgq.jpg|left|200px]]
 
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==Crystal structure of native human neuroserpin==
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The line below this paragraph, containing "STRUCTURE_3fgq", creates the "Structure Box" on the page.
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<StructureSection load='3fgq' size='340' side='right'caption='[[3fgq]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3fgq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FGQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FGQ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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{{STRUCTURE_3fgq| PDB=3fgq | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fgq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fgq OCA], [https://pdbe.org/3fgq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fgq RCSB], [https://www.ebi.ac.uk/pdbsum/3fgq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fgq ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/NEUS_HUMAN NEUS_HUMAN] Familial encephalopathy with neuroserpin inclusion bodies. The disease is caused by mutations affecting the gene represented in this entry.
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== Function ==
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[https://www.uniprot.org/uniprot/NEUS_HUMAN NEUS_HUMAN] Serine protease inhibitor that inhibits plasminogen activators and plasmin but not thrombin. May be involved in the formation or reorganization of synaptic connections as well as for synaptic plasticity in the adult nervous system. May protect neurons from cell damage by tissue-type plasminogen activator.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fg/3fgq_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fgq ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Neuroserpin is a selective inhibitor of tissue-type plasminogen activator (tPA) that plays an important role in neuronal plasticity, memory, and learning. We report here the crystal structure of native human neuroserpin at 2.1 A resolution. The structure has a helical reactive center loop and an omega loop between strands 1B and 2B. The omega loop contributes to the inhibition of tPA, as deletion of this motif reduced the association rate constant with tPA by threefold but had no effect on the kinetics of interaction with urokinase. Point mutations in neuroserpin cause the formation of ordered intracellular polymers that underlie dementia familial encephalopathy with neuroserpin inclusion bodies (FENIB). Wild-type neuroserpin is also unstable and readily forms polymers under near-physiological conditions in vitro. This is, in part, due to the substitution of a conserved alanine for serine at position 340. The replacement of Ser340 by Ala increased the melting temperature by 3 degrees C and reduced polymerization as compared to wild-type neuroserpin. Similarly, neuroserpin has Asn-Leu-Val at the end of helix F and thus differs markedly from the Gly-X-Ile consensus sequence of the serpins. Restoration of these amino acids to the consensus sequence increased thermal stability and reduced the polymerization of neuroserpin and its transition to the latent conformer. Moreover, introduction of the consensus sequence into S49P neuroserpin that causes FENIB increased the stability and inhibitory activity of the mutant, as well as blocked polymerization and increased the yield of protein during refolding. These data provide a molecular explanation for the inherent instability of neuroserpin and the effect of point mutations that underlie the dementia FENIB.
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===Crystal structure of native human neuroserpin===
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The 2.1-A crystal structure of native neuroserpin reveals unique structural elements that contribute to conformational instability.,Takehara S, Onda M, Zhang J, Nishiyama M, Yang X, Mikami B, Lomas DA J Mol Biol. 2009 Apr 24;388(1):11-20. Epub 2009 Mar 10. PMID:19285087<ref>PMID:19285087</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3fgq" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19285087}}, adds the Publication Abstract to the page
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*[[Serpin 3D structures|Serpin 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19285087 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19285087}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3FGQ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FGQ OCA].
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==Reference==
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<ref group="xtra">PMID:19285087</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Mikami, B.]]
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[[Category: Large Structures]]
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[[Category: Onda, M.]]
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[[Category: Mikami B]]
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[[Category: Takehara, S.]]
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[[Category: Onda M]]
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[[Category: Yang, X.]]
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[[Category: Takehara S]]
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[[Category: Dementia]]
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[[Category: Yang X]]
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[[Category: Disease mutation]]
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[[Category: Glycoprotein]]
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[[Category: Hydrolase inhibitor]]
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[[Category: Inhibitor]]
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[[Category: Polymerization]]
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[[Category: Protease inhibitor]]
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[[Category: Secreted]]
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[[Category: Serine protease inhibitor]]
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[[Category: Serpin]]
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[[Category: Tpa]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 30 10:01:26 2009''
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Current revision

Crystal structure of native human neuroserpin

PDB ID 3fgq

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