3a20

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(New page: '''Unreleased structure''' The entry 3a20 is ON HOLD Authors: Shibata, N., Higuchi, Y. Description: L122K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) ''Page...)
Current revision (14:07, 1 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 3a20 is ON HOLD
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==L122K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)==
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<StructureSection load='3a20' size='340' side='right'caption='[[3a20]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3a20]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._'Miyazaki_F' Desulfovibrio vulgaris str. 'Miyazaki F']. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1wll 1wll]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A20 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A20 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a20 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a20 OCA], [https://pdbe.org/3a20 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a20 RCSB], [https://www.ebi.ac.uk/pdbsum/3a20 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a20 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/FMNB_DESVM FMNB_DESVM] Functions as a redox protein with a potential of -325 mV.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a2/3a20_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a20 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Mutants of flavin mononucleotide-binding protein (FMN-bp) were made by site-directed mutagenesis to investigate the role of carboxyl-terminal Leu122 of the pairing subunit in controlling redox potentials, binding the prosthetic group, and forming the tertiary and quaternary structure. We compared the oxidation-reduction potentials, FMN-binding properties, and higher structures of wild-type FMN-bp and four mutant proteins (L122Y, L122E, L122K and L122-deleted). We found that the redox potentials were affected by mutations. Also, the affinities of L122E, L122K and L122 deletion mutant apoproteins for FMN were lower than for the wild-type apoprotein, whereas the affinity of L122Y for FMN was increased. Analytical ultracentrifugation showed that the dissociation constants for dimerization of L122E and L122K were larger than for wild-type FMN-bp, whereas the dissociation constants for L122Y and the deletion mutant were lower than for the wild type. Finally, we determined the higher structures of L122Y, L122E and L122K mutants by X-ray crystallography. Our results show that the mutation of Leu122 in FMN-bp changes midpoint potentials, dissociation constants for FMN, and dimer formation, indicating that this residue is important in the pairing subunit.
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Authors: Shibata, N., Higuchi, Y.
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Determination of the role of the Carboxyl-terminal leucine-122 in FMN-binding protein by mutational and structural analysis.,Kitamura M, Terakawa K, Inoue H, Hayashida T, Suto K, Morimoto Y, Yasuoka N, Shibata N, Higuchi Y J Biochem. 2007 Apr;141(4):459-68. Epub 2007 Jan 29. PMID:17261542<ref>PMID:17261542</ref>
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Description: L122K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 6 09:34:49 2009''
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<div class="pdbe-citations 3a20" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Desulfovibrio vulgaris str. 'Miyazaki F']]
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[[Category: Large Structures]]
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[[Category: Higuchi Y]]
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[[Category: Shibata N]]

Current revision

L122K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)

PDB ID 3a20

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