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3fy4

From Proteopedia

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{{Seed}}
 
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[[Image:3fy4.png|left|200px]]
 
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==(6-4) Photolyase Crystal Structure==
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The line below this paragraph, containing "STRUCTURE_3fy4", creates the "Structure Box" on the page.
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<StructureSection load='3fy4' size='340' side='right'caption='[[3fy4]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3fy4]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FY4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FY4 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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{{STRUCTURE_3fy4| PDB=3fy4 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fy4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fy4 OCA], [https://pdbe.org/3fy4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fy4 RCSB], [https://www.ebi.ac.uk/pdbsum/3fy4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fy4 ProSAT]</span></td></tr>
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</table>
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===(6-4) Photolyase Crystal Structure===
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== Function ==
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[https://www.uniprot.org/uniprot/UVR3_ARATH UVR3_ARATH] Involved in repair of UV radiation-induced DNA damage. Catalyzes the photoreactivation of pyrimidine [6-4] pyrimidone photoproduct (6-4 products). Binds specifically to DNA containing 6-4 products and repairs these lesions in a visible light-dependent manner. Not required for repair of cyclobutane pyrimidine dimer (CPD).<ref>PMID:17164245</ref> <ref>PMID:9421527</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_19359474}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 19359474 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fy/3fy4_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_19359474}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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3FY4 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FY4 OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fy4 ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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<ref group="xtra">PMID:19359474</ref><references group="xtra"/>
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<references/>
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__TOC__
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</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Arvai, A S.]]
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[[Category: Large Structures]]
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[[Category: Getzoff, E D.]]
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[[Category: Arvai AS]]
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[[Category: Hitomi, K.]]
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[[Category: Getzoff ED]]
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[[Category: Tainer, J A.]]
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[[Category: Hitomi K]]
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[[Category: Clock cryptochrome]]
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[[Category: Tainer JA]]
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[[Category: Dna repair]]
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[[Category: Lyase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 6 10:27:37 2009''
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Current revision

(6-4) Photolyase Crystal Structure

PDB ID 3fy4

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