This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gjb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:54, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3gjb.png|left|200px]]
 
-
<!--
+
==CytC3 with Fe(II) and alpha-ketoglutarate==
-
The line below this paragraph, containing "STRUCTURE_3gjb", creates the "Structure Box" on the page.
+
<StructureSection load='3gjb' size='340' side='right'caption='[[3gjb]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3gjb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp. Streptomyces sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GJB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GJB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3gjb| PDB=3gjb | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gjb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gjb OCA], [https://pdbe.org/3gjb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gjb RCSB], [https://www.ebi.ac.uk/pdbsum/3gjb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gjb ProSAT]</span></td></tr>
-
 
+
</table>
-
===CytC3 with Fe(II) and alpha-ketoglutarate===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/D0VX22_STRSQ D0VX22_STRSQ]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_19281171}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19281171 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gj/3gjb_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_19281171}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
3GJB is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptomyces_sp. Streptomyces sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GJB OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gjb ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:19281171</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Streptomyces sp.]]
+
[[Category: Large Structures]]
-
[[Category: Drennan, C L.]]
+
[[Category: Streptomyces sp]]
-
[[Category: Wong, C.]]
+
[[Category: Drennan CL]]
-
[[Category: Beta barrel]]
+
[[Category: Wong C]]
-
[[Category: Biosynthetic protein]]
+
-
[[Category: Cytc3]]
+
-
[[Category: Halogenase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 6 10:32:51 2009''
+

Current revision

CytC3 with Fe(II) and alpha-ketoglutarate

PDB ID 3gjb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools