2v1t

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(New page: 200px<br /><applet load="2v1t" size="450" color="white" frame="true" align="right" spinBox="true" caption="2v1t, resolution 1.92&Aring;" /> '''CRYSTAL STRUCTURE OF...)
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[[Image:2v1t.gif|left|200px]]<br /><applet load="2v1t" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2v1t, resolution 1.92&Aring;" />
 
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'''CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX'''<br />
 
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==About this Structure==
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==CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX==
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2V1T is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. This structure superseeds the now removed PDB entry 1WT4. Active as [http://en.wikipedia.org/wiki/Aldehyde_dehydrogenase_(NAD(+)) Aldehyde dehydrogenase (NAD(+))], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.3 1.2.1.3] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2V1T OCA].
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<StructureSection load='2v1t' size='340' side='right'caption='[[2v1t]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
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[[Category: Aldehyde dehydrogenase (NAD(+))]]
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== Structural highlights ==
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[[Category: Protein complex]]
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<table><tr><td colspan='2'>[[2v1t]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V1T FirstGlance]. <br>
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[[Category: Rattus norvegicus]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92&#8491;</td></tr>
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[[Category: Endo, T.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CY3:2-AMINO-3-MERCAPTO-PROPIONAMIDE'>CY3</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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[[Category: Igura, M.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1t OCA], [https://pdbe.org/2v1t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v1t RCSB], [https://www.ebi.ac.uk/pdbsum/2v1t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v1t ProSAT]</span></td></tr>
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[[Category: Kohda, D.]]
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</table>
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[[Category: Maenaka, K.]]
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== Function ==
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[[Category: Obita, T.]]
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[https://www.uniprot.org/uniprot/TOM20_RAT TOM20_RAT] Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the TOM40 translocation pore (By similarity).
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[[Category: Ose, T.]]
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== Evolutionary Conservation ==
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[[Category: acetylation]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: membrane]]
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Check<jmol>
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[[Category: mitochondrion]]
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<jmolCheckbox>
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[[Category: nad]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v1/2v1t_consurf.spt"</scriptWhenChecked>
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[[Category: outer membrane]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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[[Category: oxidoreductase]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: phosphorylation]]
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</jmolCheckbox>
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[[Category: polymorphism]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v1t ConSurf].
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[[Category: protein transport]]
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<div style="clear:both"></div>
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[[Category: transit peptide]]
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<div style="background-color:#fffaf0;">
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[[Category: transmembrane]]
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== Publication Abstract from PubMed ==
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[[Category: transport]]
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Most mitochondrial proteins are synthesized in the cytosol and imported into mitochondria. The N-terminal presequences of mitochondrial-precursor proteins contain a diverse consensus motif (phi chi chi phi phi, phi is hydrophobic and chi is any amino acid), which is recognized by the Tom20 protein on the mitochondrial surface. To reveal the structural basis of the broad selectivity of Tom20, the Tom20-presequence complex was crystallized. Tethering a presequence peptide to Tom20 through a disulfide bond was essential for crystallization. Unexpectedly, the two crystals with different linker designs provided unique relative orientations of the presequence with respect to Tom20, and neither configuration could fully account for the hydrophobic preference at the three hydrophobic positions of the consensus motif. We propose the existence of a dynamic equilibrium in solution among multiple states including the two bound states. In accordance, NMR 15N relaxation analyses suggested motion on a sub-millisecond timescale at the Tom20-presequence interface. We suggest that the dynamic, multiple-mode interaction is the molecular mechanism facilitating the broadly selective specificity of the Tom20 receptor toward diverse mitochondrial presequences.
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 14:11:09 2007''
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Tom20 recognizes mitochondrial presequences through dynamic equilibrium among multiple bound states.,Saitoh T, Igura M, Obita T, Ose T, Kojima R, Maenaka K, Endo T, Kohda D EMBO J. 2007 Nov 14;26(22):4777-87. Epub 2007 Oct 18. PMID:17948058<ref>PMID:17948058</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2v1t" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Rattus norvegicus]]
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[[Category: Endo T]]
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[[Category: Igura M]]
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[[Category: Kohda D]]
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[[Category: Maenaka K]]
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[[Category: Obita T]]
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[[Category: Ose T]]

Current revision

CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX

PDB ID 2v1t

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