3h9x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:53, 21 November 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 3h9x is ON HOLD
+
==Crystal Structure of the PSPTO_3016 protein from Pseudomonas syringae, Northeast Structural Genomics Consortium Target PsR293==
 +
<StructureSection load='3h9x' size='340' side='right'caption='[[3h9x]], [[Resolution|resolution]] 2.51&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3h9x]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato Pseudomonas syringae pv. tomato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H9X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H9X FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.51&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h9x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h9x OCA], [https://pdbe.org/3h9x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h9x RCSB], [https://www.ebi.ac.uk/pdbsum/3h9x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h9x ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q880Y4_PSESM Q880Y4_PSESM]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h9/3h9x_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h9x ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The protein Pspto_3016 is a 117-residue member of the protein domain family PF04237 (DUF419), which is to date a functionally uncharacterized family of proteins. In this report, we describe the structure of Pspto_3016 from Pseudomonas syringae solved by both solution NMR and X-ray crystallography at 2.5 A resolution. In both cases, the structure of Pspto_3016 adopts a "double wing" alpha/beta sandwich fold similar to that of protein YjbR from Escherichia coli and to the C-terminal DNA binding domain of the MotA transcription factor (MotCF) from T4 bacteriophage, along with other uncharacterized proteins. Pspto_3016 was selected by the Protein Structure Initiative of the National Institutes of Health and the Northeast Structural Genomics Consortium (NESG ID PsR293).
-
Authors: Seetharaman, J., Lew, S., Forouhar,F., Hamilton,H., Xiao,R., Ciccosanti,C., Foote,E.L., Zhao,L., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt,J.F., Tong,L., Northeast Structural Genomics Consortium (NESG)
+
Solution NMR and X-ray crystal structures of Pseudomonas syringae Pspto_3016 from protein domain family PF04237 (DUF419) adopt a "double wing" DNA binding motif.,Feldmann EA, Seetharaman J, Ramelot TA, Lew S, Zhao L, Hamilton K, Ciccosanti C, Xiao R, Acton TB, Everett JK, Tong L, Montelione GT, Kennedy MA J Struct Funct Genomics. 2012 Sep;13(3):155-62. Epub 2012 Aug 3. PMID:22865330<ref>PMID:22865330</ref>
-
Description: Crystal Structure of the PSPTO_3016 protein from Pseudomonas syringae, Northeast Structural Genomics Consortium Target PsR293
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 13 09:36:39 2009''
+
<div class="pdbe-citations 3h9x" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pseudomonas syringae pv. tomato]]
 +
[[Category: Acton TB]]
 +
[[Category: Ciccosanti C]]
 +
[[Category: Everett JK]]
 +
[[Category: Foote EL]]
 +
[[Category: Forouhar F]]
 +
[[Category: Hamilton H]]
 +
[[Category: Hunt JF]]
 +
[[Category: Lew S]]
 +
[[Category: Montelione GT]]
 +
[[Category: Nair R]]
 +
[[Category: Rost B]]
 +
[[Category: Seetharaman J]]
 +
[[Category: Tong L]]
 +
[[Category: Xiao R]]
 +
[[Category: Zhao L]]

Current revision

Crystal Structure of the PSPTO_3016 protein from Pseudomonas syringae, Northeast Structural Genomics Consortium Target PsR293

PDB ID 3h9x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3h9x"
Personal tools