2vxa

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{{Seed}}
 
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[[Image:2vxa.png|left|200px]]
 
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==H. halophila dodecin in complex with riboflavin==
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The line below this paragraph, containing "STRUCTURE_2vxa", creates the "Structure Box" on the page.
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<StructureSection load='2vxa' size='340' side='right'caption='[[2vxa]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2vxa]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VXA FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RBF:RIBOFLAVIN'>RBF</scene></td></tr>
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{{STRUCTURE_2vxa| PDB=2vxa | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vxa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxa OCA], [https://pdbe.org/2vxa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vxa RCSB], [https://www.ebi.ac.uk/pdbsum/2vxa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vxa ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DODEC_HALHL DODEC_HALHL] May function as a riboflavin storage protein that binds and sequesters riboflavin, thereby protecting cells against undesirable reactions mediated by free riboflavin. Protects bound flavin against light damage; flavin fluorescence is rapidly quenched by interaction with Trp-39.<ref>PMID:19224924</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vx/2vxa_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vxa ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Flavins are employed to transform physical input into biological output signals. In this function, flavins catalyze a variety of light-induced reactions and redox processes. However, nature also provides flavoproteins with the ability to uncouple the mediation of signals. Such proteins are the riboflavin-binding proteins (RfBPs) with their function to store riboflavin for fast delivery of FMN and FAD. Here we present in vitro and in vivo data showing that the recently discovered archaeal dodecin is an RfBP, and we reveal that riboflavin storage is not restricted to eukaryotes. However, the function of the prokaryotic RfBP dodecin seems to be adapted to the requirement of a monocellular organism. While in eukaryotes RfBPs are involved in trafficking riboflavin, and dodecin is responsible for the flavin homeostasis of the cell. Although only 68 amino acids in length, dodecin is of high functional versatility in neutralizing riboflavin to protect the cellular environment from uncontrolled flavin reactivity. Besides the predominant ultrafast quenching of excited states, dodecin prevents light-induced riboflavin reactivity by the selective degradation of riboflavin to lumichrome. Coordinated with the high affinity for lumichrome, the directed degradation reaction is neutral to the cellular environment and provides an alternative pathway for suppressing uncontrolled riboflavin reactivity. Intriguingly, the different structural and functional properties of a homologous bacterial dodecin suggest that dodecin has different roles in different kingdoms of life.
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===H.HALOPHILA DODECIN IN COMPLEX WITH RIBOFLAVIN===
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Dodecin is the key player in flavin homeostasis of archaea.,Grininger M, Staudt H, Johansson P, Wachtveitl J, Oesterhelt D J Biol Chem. 2009 May 8;284(19):13068-76. Epub 2009 Feb 17. PMID:19224924<ref>PMID:19224924</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19224924}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2vxa" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19224924 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19224924}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2VXA is a 12 chains structure of sequences from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXA OCA].
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==Reference==
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<ref group="xtra">PMID:19224924</ref><references group="xtra"/>
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[[Category: Halorhodospira halophila]]
[[Category: Halorhodospira halophila]]
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[[Category: Grininger, M.]]
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[[Category: Large Structures]]
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[[Category: Johansson, P.]]
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[[Category: Grininger M]]
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[[Category: Oesterhelt, D.]]
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[[Category: Johansson P]]
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[[Category: Staudt, H.]]
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[[Category: Oesterhelt D]]
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[[Category: Wachtveitl, J.]]
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[[Category: Staudt H]]
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[[Category: Archaea]]
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[[Category: Wachtveitl J]]
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[[Category: Dodecin]]
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[[Category: Flavin]]
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[[Category: Flavoprotein]]
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[[Category: Lumichrome]]
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[[Category: Riboflavin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 13 10:39:08 2009''
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Current revision

H. halophila dodecin in complex with riboflavin

PDB ID 2vxa

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