This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vay

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1vay" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vay, resolution 2.24&Aring;" /> '''Crystal Structure of...)
Current revision (07:51, 25 October 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vay.gif|left|200px]]<br /><applet load="1vay" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1vay, resolution 2.24&Aring;" />
 
-
'''Crystal Structure of Uricase from Arthrobacter globiformis with inhibitor 8-azaxanthine'''<br />
 
-
==About this Structure==
+
==Crystal Structure of Uricase from Arthrobacter globiformis with inhibitor 8-azaxanthine==
-
1VAY is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis] with AZA as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Urate_oxidase Urate oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.3.3 1.7.3.3] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VAY OCA].
+
<StructureSection load='1vay' size='340' side='right'caption='[[1vay]], [[Resolution|resolution]] 2.24&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1vay]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VAY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VAY FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.24&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZA:8-AZAXANTHINE'>AZA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vay OCA], [https://pdbe.org/1vay PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vay RCSB], [https://www.ebi.ac.uk/pdbsum/1vay PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vay ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/1vay_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vay ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Arthrobacter globiformis]]
[[Category: Arthrobacter globiformis]]
-
[[Category: Protein complex]]
+
[[Category: Large Structures]]
-
[[Category: Urate oxidase]]
+
[[Category: Hossain MT]]
-
[[Category: Hossain, M.T.]]
+
[[Category: Imamura S]]
-
[[Category: Imamura, S.]]
+
[[Category: Sekiguchi T]]
-
[[Category: Sekiguchi, T.]]
+
[[Category: Suzuki K]]
-
[[Category: Suzuki, K.]]
+
[[Category: Takenaka A]]
-
[[Category: Takenaka, A.]]
+
[[Category: Yamamoto T]]
-
[[Category: Yamamoto, T.]]
+
-
[[Category: AZA]]
+
-
[[Category: oxidoreductase]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 21:59:44 2007''
+

Current revision

Crystal Structure of Uricase from Arthrobacter globiformis with inhibitor 8-azaxanthine

PDB ID 1vay

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools