This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3fw9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:53, 6 September 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3fw9.jpg|left|200px]]
 
-
<!--
+
==Structure of berberine bridge enzyme in complex with (S)-scoulerine==
-
The line below this paragraph, containing "STRUCTURE_3fw9", creates the "Structure Box" on the page.
+
<StructureSection load='3fw9' size='340' side='right'caption='[[3fw9]], [[Resolution|resolution]] 1.49&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3fw9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Eschscholzia_californica Eschscholzia californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FW9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FW9 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.489&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SLX:(13AS)-3,10-DIMETHOXY-5,8,13,13A-TETRAHYDRO-6H-ISOQUINO[3,2-A]ISOQUINOLINE-2,9-DIOL'>SLX</scene></td></tr>
-
{{STRUCTURE_3fw9| PDB=3fw9 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fw9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fw9 OCA], [https://pdbe.org/3fw9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fw9 RCSB], [https://www.ebi.ac.uk/pdbsum/3fw9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fw9 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RETO_ESCCA RETO_ESCCA] Essential to the formation of benzophenanthridine alkaloids in the response of plants to pathogenic attack. Catalyzes the stereospecific conversion of the N-methyl moiety of (S)-reticuline into the berberine bridge carbon of (S)-scoulerine.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fw/3fw9_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fw9 ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of berberine bridge enzyme in complex with (S)-scoulerine===
+
==See Also==
-
 
+
*[[Reticuline oxidase|Reticuline oxidase]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3FW9 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Eschscholzia_californica Eschscholzia californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FW9 OCA].
+
[[Category: Eschscholzia californica]]
[[Category: Eschscholzia californica]]
-
[[Category: Reticuline oxidase]]
+
[[Category: Large Structures]]
-
[[Category: Gruber, K.]]
+
[[Category: Gruber K]]
-
[[Category: Macheroux, P.]]
+
[[Category: Macheroux P]]
-
[[Category: Winkler, A.]]
+
[[Category: Winkler A]]
-
[[Category: Alakloid biosynthesis]]
+
-
[[Category: Alkaloid metabolism]]
+
-
[[Category: Bi-covalent flavinylation]]
+
-
[[Category: Cytoplasmic vesicle]]
+
-
[[Category: Fad]]
+
-
[[Category: Flavoprotein]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: N-glycosylation]]
+
-
[[Category: Oxidoreductase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 20 18:00:56 2009''
+

Current revision

Structure of berberine bridge enzyme in complex with (S)-scoulerine

PDB ID 3fw9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools