This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ih6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1ih6" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ih6, resolution 1.45&Aring;" /> '''Multi-Conformation C...)
Current revision (07:35, 7 February 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ih6.gif|left|200px]]<br /><applet load="1ih6" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1ih6, resolution 1.45&Aring;" />
 
-
'''Multi-Conformation Crystal Structure of GGBr5CGCC'''<br />
 
-
==Overview==
+
==Multi-Conformation Crystal Structure of GGBr5CGCC==
-
The transition between B- and A-DNA was first observed nearly 50 years, ago. We have now mapped this transformation through a set of, single-crystal structures of the sequence d(GGCGCC)2, with various, intermediates being trapped by methylating or brominating the cytosine, bases. The resulting pathway progresses through 13 conformational steps, with a composite structure that pairs A-nucleotides with complementary, B-nucleotides serving as a distinct transition intermediate. The details, of each step in the conversion of B- to A-DNA are thus revealed at the, atomic level, placing intermediates for this and other sequences in the, context of a common pathway.
+
<StructureSection load='1ih6' size='340' side='right'caption='[[1ih6]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[1ih6]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IH6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IH6 FirstGlance]. <br>
-
1IH6 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1IH6 OCA].
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>
-
==Reference==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ih6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ih6 OCA], [https://pdbe.org/1ih6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ih6 RCSB], [https://www.ebi.ac.uk/pdbsum/1ih6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ih6 ProSAT]</span></td></tr>
-
A crystallographic map of the transition from B-DNA to A-DNA., Vargason JM, Henderson K, Ho PS, Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7265-70. Epub 2001 Jun 5. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11390969 11390969]
+
</table>
-
[[Category: Protein complex]]
+
__TOC__
-
[[Category: Henderson, K.]]
+
</StructureSection>
-
[[Category: Ho, P.S.]]
+
[[Category: Large Structures]]
-
[[Category: Vargason, J.M.]]
+
[[Category: Henderson K]]
-
[[Category: b to a dna transition]]
+
[[Category: Ho PS]]
-
[[Category: dna transition]]
+
[[Category: Vargason JM]]
-
[[Category: structural transition]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 22:00:25 2007''
+

Current revision

Multi-Conformation Crystal Structure of GGBr5CGCC

PDB ID 1ih6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools