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1r3g

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(New page: 200px<br /><applet load="1r3g" size="450" color="white" frame="true" align="right" spinBox="true" caption="1r3g, resolution 1.16&Aring;" /> '''1.16A X-ray structur...)
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[[Image:1r3g.gif|left|200px]]<br /><applet load="1r3g" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1r3g, resolution 1.16&Aring;" />
 
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'''1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues'''<br />
 
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==Overview==
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==1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues==
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[structure: see text] Oligonucleotides with a novel, 2'-O-[2-(guanidinium)ethyl] (2'-O-GE) modification have been synthesized, using a novel protecting group strategy for the guanidinium group. This, modification enhances the binding affinity of oligonucleotides to RNA as, well as duplex DNA (DeltaT(m) 3.2 degrees C per modification). The 2'-O-GE, modified oligonucleotides exhibited exceptional resistance to nuclease, degradation. The crystal structure of a palindromic duplex formed by a DNA, oligonucleotide with a single 2'-O-GE modification was solved at 1.16 A, resolution.
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<StructureSection load='1r3g' size='340' side='right'caption='[[1r3g]], [[Resolution|resolution]] 1.16&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1r3g]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R3G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R3G FirstGlance]. <br>
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1R3G is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ] with MG as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1R3G OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.16&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GMU:2-O-[(2-GUANIDINIUM)ETHYL]-5-METHYLURIDINE+5-MONOPHOSPHATE'>GMU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r3g OCA], [https://pdbe.org/1r3g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r3g RCSB], [https://www.ebi.ac.uk/pdbsum/1r3g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r3g ProSAT]</span></td></tr>
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2'-O-[2-(guanidinium)ethyl]-modified oligonucleotides: stabilizing effect on duplex and triplex structures., Prakash TP, Puschl A, Lesnik E, Mohan V, Tereshko V, Egli M, Manoharan M, Org Lett. 2004 Jun 10;6(12):1971-4. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15176796 15176796]
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</table>
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[[Category: Protein complex]]
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__TOC__
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[[Category: Egli, M.]]
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</StructureSection>
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[[Category: Lesnik, E.]]
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[[Category: Large Structures]]
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[[Category: Manoharan, M.]]
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[[Category: Egli M]]
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[[Category: Prakash, T.P.]]
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[[Category: Lesnik E]]
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[[Category: Puschl, A.]]
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[[Category: Manoharan M]]
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[[Category: Tereshko, V.]]
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[[Category: Prakash TP]]
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[[Category: MG]]
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[[Category: Puschl A]]
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[[Category: dna]]
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[[Category: Tereshko V]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 22:02:37 2007''
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Current revision

1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues

PDB ID 1r3g

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