1ve3

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(New page: 200px<br /><applet load="1ve3" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ve3, resolution 2.10&Aring;" /> '''Crystal structure of...)
Current revision (07:33, 30 October 2024) (edit) (undo)
 
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[[Image:1ve3.gif|left|200px]]<br /><applet load="1ve3" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1ve3, resolution 2.10&Aring;" />
 
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'''Crystal structure of PH0226 protein from Pyrococcus horikoshii OT3'''<br />
 
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==About this Structure==
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==Crystal structure of PH0226 protein from Pyrococcus horikoshii OT3==
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1VE3 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii] with SAM as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VE3 OCA].
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<StructureSection load='1ve3' size='340' side='right'caption='[[1ve3]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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[[Category: Pyrococcus horikoshii]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[1ve3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VE3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VE3 FirstGlance]. <br>
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[[Category: Kunishima, N.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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[[Category: Lokanath, N.K.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
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[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ve3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ve3 OCA], [https://pdbe.org/1ve3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ve3 RCSB], [https://www.ebi.ac.uk/pdbsum/1ve3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ve3 ProSAT], [https://www.topsan.org/Proteins/RSGI/1ve3 TOPSAN]</span></td></tr>
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[[Category: Yamamoto, H.]]
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</table>
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[[Category: SAM]]
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== Function ==
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[[Category: dimer]]
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[https://www.uniprot.org/uniprot/O57965_PYRHO O57965_PYRHO]
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[[Category: riken structural genomics/proteomics initiative]]
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== Evolutionary Conservation ==
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[[Category: rsgi]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: structural genomics]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ve/1ve3_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ve3 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Methyltransferases (MTs) are enzymes involved in methylation that are needed to perform cellular processes such as biosynthesis, metabolism, gene expression, protein trafficking and signal transduction. The cofactor S-adenosyl-L-methionine (SAM) is used for catalysis by SAM-dependent methyltransferases (SAM-MTs). The crystal structure of Pyrococcus horikoshii SAM-MT was determined to a resolution of 2.1 A using X-ray diffraction. The monomeric structure consists of a Rossmann-like fold (domain I) and a substrate-binding domain (domain II). The cofactor (SAM) molecule binds at the interface between adjacent subunits, presumably near to the active site(s) of the enzyme. The observed dimeric state might be important for the catalytic function of the enzyme.
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 22:16:00 2007''
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Crystal structure of SAM-dependent methyltransferase from Pyrococcus horikoshii.,Pampa KJ, Madan Kumar S, Hema MK, Kumara K, Naveen S, Kunishima N, Lokanath NK Acta Crystallogr F Struct Biol Commun. 2017 Dec 1;73(Pt 12):706-712. doi:, 10.1107/S2053230X17016648. Epub 2017 Nov 24. PMID:29199993<ref>PMID:29199993</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1ve3" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Pyrococcus horikoshii]]
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[[Category: Kunishima N]]
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[[Category: Lokanath NK]]
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[[Category: Yamamoto H]]

Current revision

Crystal structure of PH0226 protein from Pyrococcus horikoshii OT3

PDB ID 1ve3

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