This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2bok

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:50, 13 December 2023) (edit) (undo)
 
(25 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2bok.gif|left|200px]]<br />
 
-
<applet load="2bok" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2bok, resolution 1.64&Aring;" />
 
-
'''FACTOR XA- CATION'''<br />
 
-
==About this Structure==
+
==Factor Xa - cation==
-
2BOK is a [[http://en.wikipedia.org/wiki/Protein_complex Protein complex]] structure of sequences from [[http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]] with NA and 784 as [[http://en.wikipedia.org/wiki/ligands ligands]]. Active as [[http://en.wikipedia.org/wiki/Hydrolase Hydrolase]], with EC number [[http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.6 3.4.21.6]]. Structure known Active Site: AC1. Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2BOK OCA]].
+
<StructureSection load='2bok' size='340' side='right'caption='[[2bok]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2bok]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BOK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BOK FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=784:[AMINO+(4-{(3AS,4R,8AS,8BR)-1,3-DIOXO-2-+[3-(TRIMETHYLAMMONIO)+PROPYL]DECAHYDROPYRROLO[3,4-A]+PYRROLIZIN-4-YL}PHENYL)+METHYLENE]AMMONIUM'>784</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bok FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bok OCA], [https://pdbe.org/2bok PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bok RCSB], [https://www.ebi.ac.uk/pdbsum/2bok PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bok ProSAT]</span></td></tr>
 +
</table>
 +
== Disease ==
 +
[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Defects in F10 are the cause of factor X deficiency (FA10D) [MIM:[https://omim.org/entry/227600 227600]. A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis.<ref>PMID:2790181</ref> <ref>PMID:1973167</ref> <ref>PMID:1985698</ref> <ref>PMID:7669671</ref> <ref>PMID:8529633</ref> <ref>PMID:7860069</ref> <ref>PMID:8845463</ref> <ref>PMID:8910490</ref> <ref>PMID:10468877</ref> <ref>PMID:10746568</ref> <ref>PMID:10739379</ref> <ref>PMID:11248282</ref> <ref>PMID:11728527</ref> <ref>PMID:12945883</ref> <ref>PMID:15650540</ref> <ref>PMID:17393015</ref> <ref>PMID:19135706</ref>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bo/2bok_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bok ConSurf].
 +
<div style="clear:both"></div>
-
==Reference==
+
==See Also==
-
Quantification of cation-pi interactions in protein-ligand complexes: crystal-structure analysis of Factor Xa bound to a quaternary ammonium ion ligand., Scharer K, Morgenthaler M, Paulini R, Obst-Sander U, Banner DW, Schlatter D, Benz J, Stihle M, Diederich F, Angew Chem Int Ed Engl. 2005 Jul 11;44(28):4400-4. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15952226 15952226]
+
*[[Factor Xa|Factor Xa]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Protein complex]]
+
[[Category: Large Structures]]
-
[[Category: Banner, D.W.]]
+
[[Category: Banner DW]]
-
[[Category: Benz, J.]]
+
[[Category: Benz J]]
-
[[Category: Diederich, F.]]
+
[[Category: Diederich F]]
-
[[Category: Morgenthaler, M.]]
+
[[Category: Morgenthaler M]]
-
[[Category: Obst-Sander, U.]]
+
[[Category: Obst-Sander U]]
-
[[Category: Paulini, R.]]
+
[[Category: Paulini R]]
-
[[Category: Schaerer, K.]]
+
[[Category: Schaerer K]]
-
[[Category: Schlatter, D.]]
+
[[Category: Schlatter D]]
-
[[Category: Stihle, M.]]
+
[[Category: Stihle M]]
-
[[Category: 784]]
+
-
[[Category: NA]]
+
-
[[Category: cation]]
+
-
[[Category: coagulation factor]]
+
-
[[Category: egf-like domain]]
+
-
[[Category: hydrolase]]
+
-
[[Category: inhibitor]]
+
-
[[Category: plasma]]
+
-
[[Category: protease]]
+
-
[[Category: serine protease]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Oct 30 08:23:32 2007''
+

Current revision

Factor Xa - cation

PDB ID 2bok

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools