1n1i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1n1i" size="450" color="white" frame="true" align="right" spinBox="true" caption="1n1i, resolution 2.40&Aring;" /> '''The structure of MSP...)
Current revision (00:16, 21 November 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1n1i.jpg|left|200px]]<br /><applet load="1n1i" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1n1i, resolution 2.40&Aring;" />
 
-
'''The structure of MSP-1(19) from Plasmodium knowlesi'''<br />
 
-
==Overview==
+
==The structure of MSP-1(19) from Plasmodium knowlesi==
-
The protozoan parasite Plasmodium causes malaria, with hundreds of, millions of cases recorded annually. Protection against malaria infection, can be conferred by antibodies against merozoite surface protein (MSP)-1, making it an attractive vaccine candidate. Here we present the structure, of the C-terminal domains of MSP-1 (known as MSP-1(19)) from Plasmodium, knowlesi. The structure reveals two tightly packed epidermal growth, factor-like domains oriented head to tail. In domain 1, the molecule, displays a histidine binding site formed primarily by a highly conserved, tryptophan. The protein carries a pronounced overall negative charge, primarily due to the large number of acidic groups in domain 2. To map, protein binding surfaces on MSP-1(19), we have analyzed the crystal, contacts in five different crystal environments, revealing that domain 1, is highly preferred in protein-protein interactions. A comparison of, MSP-1(19) structures from P. knowlesi, P. cynomolgi, and P. falciparum, shows that, although the overall protein folds are similar, the molecules, show significant differences in charge distribution. We propose the, histidine binding site in domain 1 as a target for inhibitors of protein, binding to MSP-1, which might prevent invasion of the merozoite into red, blood cells.
+
<StructureSection load='1n1i' size='340' side='right'caption='[[1n1i]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1n1i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_knowlesi_strain_H Plasmodium knowlesi strain H]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N1I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N1I FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HIS:HISTIDINE'>HIS</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n1i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n1i OCA], [https://pdbe.org/1n1i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n1i RCSB], [https://www.ebi.ac.uk/pdbsum/1n1i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n1i ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n1/1n1i_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n1i ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The protozoan parasite Plasmodium causes malaria, with hundreds of millions of cases recorded annually. Protection against malaria infection can be conferred by antibodies against merozoite surface protein (MSP)-1, making it an attractive vaccine candidate. Here we present the structure of the C-terminal domains of MSP-1 (known as MSP-1(19)) from Plasmodium knowlesi. The structure reveals two tightly packed epidermal growth factor-like domains oriented head to tail. In domain 1, the molecule displays a histidine binding site formed primarily by a highly conserved tryptophan. The protein carries a pronounced overall negative charge primarily due to the large number of acidic groups in domain 2. To map protein binding surfaces on MSP-1(19), we have analyzed the crystal contacts in five different crystal environments, revealing that domain 1 is highly preferred in protein-protein interactions. A comparison of MSP-1(19) structures from P. knowlesi, P. cynomolgi, and P. falciparum shows that, although the overall protein folds are similar, the molecules show significant differences in charge distribution. We propose the histidine binding site in domain 1 as a target for inhibitors of protein binding to MSP-1, which might prevent invasion of the merozoite into red blood cells.
-
==About this Structure==
+
Structure of the C-terminal domains of merozoite surface protein-1 from Plasmodium knowlesi reveals a novel histidine binding site.,Garman SC, Simcoke WN, Stowers AW, Garboczi DN J Biol Chem. 2003 Feb 28;278(9):7264-9. Epub 2002 Dec 19. PMID:12493733<ref>PMID:12493733</ref>
-
1N1I is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Plasmodium_knowlesi Plasmodium knowlesi] with IMD and HIS as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1N1I OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Structure of the C-terminal domains of merozoite surface protein-1 from Plasmodium knowlesi reveals a novel histidine binding site., Garman SC, Simcoke WN, Stowers AW, Garboczi DN, J Biol Chem. 2003 Feb 28;278(9):7264-9. Epub 2002 Dec 19. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12493733 12493733]
+
</div>
-
[[Category: Plasmodium knowlesi]]
+
<div class="pdbe-citations 1n1i" style="background-color:#fffaf0;"></div>
-
[[Category: Single protein]]
+
== References ==
-
[[Category: Garboczi, D.N.]]
+
<references/>
-
[[Category: Garman, S.C.]]
+
__TOC__
-
[[Category: Simcoke, W.N.]]
+
</StructureSection>
-
[[Category: Stowers, A.W.]]
+
[[Category: Large Structures]]
-
[[Category: HIS]]
+
[[Category: Plasmodium knowlesi strain H]]
-
[[Category: IMD]]
+
[[Category: Garboczi DN]]
-
[[Category: egf domain]]
+
[[Category: Garman SC]]
-
[[Category: glycoprotein]]
+
[[Category: Simcoke WN]]
-
[[Category: malaria]]
+
[[Category: Stowers AW]]
-
[[Category: msp1]]
+
-
[[Category: surface antigen]]
+
-
[[Category: surface protein]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 22:23:16 2007''
+

Current revision

The structure of MSP-1(19) from Plasmodium knowlesi

PDB ID 1n1i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools