This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3hmu
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3hmu is ON HOLD Authors: Toro, R., Bonanno, J.B., Ramagopal, U., Freeman, J., Bain, K.T., Miller, S., Sauder, J.M., Burley, S.K., Almo, S.C., New Yo...) |
|||
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of a class III aminotransferase from Silicibacter pomeroyi== | |
| - | + | <StructureSection load='3hmu' size='340' side='right'caption='[[3hmu]], [[Resolution|resolution]] 2.10Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3hmu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HMU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HMU FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hmu OCA], [https://pdbe.org/3hmu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hmu RCSB], [https://www.ebi.ac.uk/pdbsum/3hmu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hmu ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3hmu TOPSAN]</span></td></tr> | |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q5LMU1_RUEPO Q5LMU1_RUEPO] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hm/3hmu_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hmu ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Ruegeria pomeroyi]] | ||
| + | [[Category: Almo SC]] | ||
| + | [[Category: Bain KT]] | ||
| + | [[Category: Bonanno JB]] | ||
| + | [[Category: Burley SK]] | ||
| + | [[Category: Freeman J]] | ||
| + | [[Category: Miller S]] | ||
| + | [[Category: Ramagopal U]] | ||
| + | [[Category: Sauder JM]] | ||
| + | [[Category: Toro R]] | ||
Current revision
Crystal structure of a class III aminotransferase from Silicibacter pomeroyi
| |||||||||||
Categories: Large Structures | Ruegeria pomeroyi | Almo SC | Bain KT | Bonanno JB | Burley SK | Freeman J | Miller S | Ramagopal U | Sauder JM | Toro R
