This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3f7c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:36, 1 February 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3f7c.png|left|200px]]
 
-
<!--
+
==Crystal structure of a duf416 family protein (maqu_0942) from marinobacter aquaeolei vt8 at 2.00 A resolution==
-
The line below this paragraph, containing "STRUCTURE_3f7c", creates the "Structure Box" on the page.
+
<StructureSection load='3f7c' size='340' side='right'caption='[[3f7c]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3f7c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Marinobacter_nauticus_VT8 Marinobacter nauticus VT8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F7C FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f7c OCA], [https://pdbe.org/3f7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f7c RCSB], [https://www.ebi.ac.uk/pdbsum/3f7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f7c ProSAT], [https://www.topsan.org/Proteins/JCSG/3f7c TOPSAN]</span></td></tr>
-
{{STRUCTURE_3f7c| PDB=3f7c | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of protein of unknown function (DUF416) (YP_958225.1) from MARINOBACTER AQUAEOLEI VT8 at 2.00 A resolution===
+
[https://www.uniprot.org/uniprot/A1TZ69_MARN8 A1TZ69_MARN8]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3F7C is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Marinobacter_aquaeolei_vt8 Marinobacter aquaeolei vt8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F7C OCA].
+
<jmolCheckbox>
-
[[Category: Marinobacter aquaeolei vt8]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f7/3f7c_consurf.spt"</scriptWhenChecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Jcsg]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joint center for structural genomic]]
+
</jmolCheckbox>
-
[[Category: Protein structure initiative]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f7c ConSurf].
-
[[Category: Psi-2]]
+
<div style="clear:both"></div>
-
[[Category: Structural genomic]]
+
__TOC__
-
[[Category: Unknown function]]
+
</StructureSection>
-
[[Category: Yp_958225 1]]
+
[[Category: Large Structures]]
-
 
+
[[Category: Marinobacter nauticus VT8]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 18:30:59 2009''
+

Current revision

Crystal structure of a duf416 family protein (maqu_0942) from marinobacter aquaeolei vt8 at 2.00 A resolution

PDB ID 3f7c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3f7c"
Personal tools