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3dxy

From Proteopedia

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{{Seed}}
 
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[[Image:3dxy.png|left|200px]]
 
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<!--
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==Crystal structure of EcTrmB in complex with SAM==
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The line below this paragraph, containing "STRUCTURE_3dxy", creates the "Structure Box" on the page.
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<StructureSection load='3dxy' size='340' side='right'caption='[[3dxy]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3dxy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DXY FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_3dxy| PDB=3dxy | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dxy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxy OCA], [https://pdbe.org/3dxy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dxy RCSB], [https://www.ebi.ac.uk/pdbsum/3dxy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dxy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TRMB_ECOLI TRMB_ECOLI] Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dxy ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of EcTrmB in complex with SAM===
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==See Also==
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*[[TRNA methyltransferase 3D structures|TRNA methyltransferase 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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3DXY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXY OCA].
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[[Category: Escherichia coli K-12]]
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[[Category: Large Structures]]
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==Reference==
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[[Category: Gao YX]]
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<ref group="xtra">PMID:19373903</ref><references group="xtra"/>
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[[Category: Liu Q]]
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[[Category: Escherichia coli k12]]
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[[Category: Niu LW]]
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[[Category: Gao, Y X.]]
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[[Category: Teng MK]]
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[[Category: Liu, Q.]]
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[[Category: Zhou HH]]
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[[Category: Niu, L W.]]
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[[Category: Teng, M K.]]
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[[Category: Zhou, H H.]]
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[[Category: Methyltransferase]]
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[[Category: Rossmann fold methyltransferase]]
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[[Category: S-adenosyl-l-methionine]]
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[[Category: Transferase]]
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[[Category: Trna modification]]
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[[Category: Trna processing]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 17 09:22:20 2009''
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Current revision

Crystal structure of EcTrmB in complex with SAM

PDB ID 3dxy

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OCA

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