This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2k6p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:10, 29 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2k6p.png|left|200px]]
 
-
<!--
+
==Solution Structure of hypothetical protein, HP1423==
-
The line below this paragraph, containing "STRUCTURE_2k6p", creates the "Structure Box" on the page.
+
<StructureSection load='2k6p' size='340' side='right'caption='[[2k6p]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2k6p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K6P FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k6p OCA], [https://pdbe.org/2k6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k6p RCSB], [https://www.ebi.ac.uk/pdbsum/2k6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k6p ProSAT]</span></td></tr>
-
{{STRUCTURE_2k6p| PDB=2k6p | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Solution Structure of hypothetical protein, HP1423===
+
[https://www.uniprot.org/uniprot/Y1423_HELPY Y1423_HELPY]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2K6P is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K6P OCA].
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k6/2k6p_consurf.spt"</scriptWhenChecked>
-
==Reference==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
<ref group="xtra">PMID:19137609</ref><references group="xtra"/>
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k6p ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Helicobacter pylori]]
[[Category: Helicobacter pylori]]
-
[[Category: Kim, J.]]
+
[[Category: Large Structures]]
-
[[Category: Lee, B.]]
+
[[Category: Kim J]]
-
[[Category: Lee, K.]]
+
[[Category: Lee B]]
-
[[Category: Park, S.]]
+
[[Category: Lee K]]
-
[[Category: Sohn, N.]]
+
[[Category: Park S]]
-
[[Category: Son, W.]]
+
[[Category: Sohn N]]
-
[[Category: Alpha-l motif]]
+
[[Category: Son W]]
-
[[Category: Hp1423]]
+
-
[[Category: Nmr]]
+
-
[[Category: Rna-binding]]
+
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 25 08:32:07 2009''
+

Current revision

Solution Structure of hypothetical protein, HP1423

PDB ID 2k6p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools