3eki

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{{Seed}}
 
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[[Image:3eki.jpg|left|200px]]
 
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==Structural insights of the Mycoplasma hyorhinis protein Mh-p37: A putative thiamine pyrophosphate transporter==
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The line below this paragraph, containing "STRUCTURE_3eki", creates the "Structure Box" on the page.
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<StructureSection load='3eki' size='340' side='right'caption='[[3eki]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3eki]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesomycoplasma_hyorhinis Mesomycoplasma hyorhinis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EKI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EKI FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
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{{STRUCTURE_3eki| PDB=3eki | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3eki FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eki OCA], [https://pdbe.org/3eki PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3eki RCSB], [https://www.ebi.ac.uk/pdbsum/3eki PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3eki ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/P37_MESHY P37_MESHY]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ek/3eki_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3eki ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The Mycoplasma hyorhinis protein p37 has been implicated in tumorigenic transformation for more than 20 years. Though there are many speculations as to its function, based solely on sequence homology, the issue has remained unresolved. Presented here is the 1.6-A-resolution refined crystal structure of M. hyorhinis p37, renamed the extracytoplasmic thiamine-binding lipoprotein (Cypl). The structure shows thiamine pyrophosphate (TPP) and two calcium ions are bound to Cypl and give the first insights into possible functions of the Cypl-like family of proteins. Sequence alignments of Cypl-like proteins between several different species of mycoplasma show that the thiamine-binding site is likely conserved and structural alignments reveal the similarity of Cypl to various binding proteins. While the experimentally determined function of Cypl remains unknown, the structure shows that the protein is a TPP-binding protein, opening up many avenues for future mechanistic studies and making Cypl a possible target for combating mycoplasma infections and tumorigenic transformation.
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===Structural insights of the Mycoplasma hyorhinis protein Mh-p37: A putative thiamine pyrophosphate transporter===
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Structural insights into the extracytoplasmic thiamine-binding lipoprotein p37 of Mycoplasma hyorhinis.,Sippel KH, Robbins AH, Reutzel R, Boehlein SK, Namiki K, Goodison S, Agbandje-McKenna M, Rosser CJ, McKenna R J Bacteriol. 2009 Apr;191(8):2585-92. Epub 2009 Feb 20. PMID:19233924<ref>PMID:19233924</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19233924}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3eki" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19233924 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19233924}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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3EKI is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Mycoplasma_hyorhinis Mycoplasma hyorhinis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EKI OCA].
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[[Category: Mesomycoplasma hyorhinis]]
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[[Category: McKenna R]]
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==Reference==
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[[Category: Reutzel R]]
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<ref group="xtra">PMID:19233924</ref><references group="xtra"/>
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[[Category: Robbins AH]]
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[[Category: Mycoplasma hyorhinis]]
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[[Category: Sippel KH]]
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[[Category: McKenna, R.]]
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[[Category: Reutzel, R.]]
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[[Category: Robbins, A H.]]
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[[Category: Sippel, K H.]]
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[[Category: Cell membrane]]
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[[Category: Cypl]]
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[[Category: Extracytoplasmic thiamine binding lipoprotein]]
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[[Category: Lipoprotein]]
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[[Category: Membrane]]
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[[Category: Mycoplasma]]
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[[Category: P37]]
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[[Category: Palmitate]]
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[[Category: Tpp]]
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[[Category: Tpp binding protein]]
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[[Category: Transport]]
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[[Category: Transport protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 25 09:13:38 2009''
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Current revision

Structural insights of the Mycoplasma hyorhinis protein Mh-p37: A putative thiamine pyrophosphate transporter

PDB ID 3eki

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